Jiang Bian, Ph.D.
Professor & Chief Data Scientist, UF Health
Department:
MD-HOBI-BIOMED INFORMATICS
Business Phone:
(352) 273-8878
Business Email:
bianjiang@ufl.edu
About Jiang Bian
Biomedical Informatics is an interdisciplinary field, where the central theme is to explore the effective uses of data, information, and knowledge for scientific inquiry, problem-solving, and decision making, motived by efforts to import human health. I have a diverse yet strong multi-disciplinary background in data integration, semantic web, machine learning, natural language processing, social media analysis, network science, data privacy, and software engineering. Nevertheless, my expertise and background serve an overarching theme: data science with heterogeneous data, information and knowledge resources.
I currently serve as the Chief Data Scientist for UF Health, Director of Cancer Informatics Shared Resource (and its eHealth Core program http://bit.ly/36IBw5s jointly supported by the UF CTSI), Associate Director of the Biomedical Informatics Program for the UF Clinical and Translational Science Institute (CTSI; https://www.ctsi.ufl.edu/about/ctsi-programs/biomedical-informatics/), and the Chief Data Scientist for the OneFlorida+ Clinical Research Consortium (https://onefloridaconsortium.org/).
Additional Positions:
Chief Data Scientist
2022 – Current
·
University of Florida Health
Chief Data Scientist
2022 – Current
·
OneFlorida+ Clinical Research Consortium
Associate Director of Biomedical Informatics Program
2021 – Current
·
Clinical and Translational Science Institute, UF
Director of Cancer Informatics Shared Resource
2018 – Current
·
UF Health Cancer Center
Teaching Profile
Courses Taught
2020,2022-2023
GMS6850 Foundations of Biomedical Informatics
2018,2020-2022,2022
GMS6806 Security and Privacy for Clinical Research
2015-2018
GMS6803 Data Science for Clinical Research
2018
GMS7979 Advanced Research
2018
GMS7980 Research for Doctoral Dissertation
2018
NGR7980 Research for Doctoral Dissertation
2017-2018
NGR7979 Advanced Research
2016
GMS6090 Research in Medical Sciences
2015
GMS6888 Mentored Research Hop
Research Profile
I have a diverse yet strong multi-disciplinary background. Nevertheless, my expertise and background serve an overarching theme: data science with heterogeneous data, information and knowledge resources. My research areas can be divided into three logical sections under this overarching theme: (1) data-driven medicine—applications of informatics techniques, including machine learning methods in medicine on solving big data problems; (2) mining the Internet, including the social web, to provide insights into health-related behavior and health outcomes of various populations and finding ways to develop interventions that promote public and consumer health; and (3) development of novel informatics methods, tools and systems to support clinical and clinical research activities such as tools for data integration, clinical trial generalizability assessment, and cohort discovery.
Google Scholar: https://scholar.google.com/citations?hl=en&user=ysr–voAAAAJ&view_op=list_works&sortby=pubdate
Areas of Interest
- Cancer Informatics
- Social media
- data privacy in healthcare
- data science
- eHealth and user-centered design
- semantic web
Open Researcher and Contributor ID (ORCID)
0000-0002-2238-5429
Publications
2023
Assessing the impact of privacy-preserving record linkage on record overlap and patient demographic and clinical characteristics in PCORnet®, the National Patient-Centered Clinical Research Network
Journal of the American Medical Informatics Association.
30(3):447-455
[DOI] 10.1093/jamia/ocac229.
[PMID] 36451264.
2023
Data-driven identification of post-acute SARS-CoV-2 infection subphenotypes
Nature Medicine.
29(1):226-235
[DOI] 10.1038/s41591-022-02116-3.
[PMID] 36456834.
2023
Early prediction of Alzheimer’s disease and related dementias using real‐world electronic health records
Alzheimer's & Dementia.
[DOI] 10.1002/alz.12967.
2023
Identifying environmental risk factors for post-acute sequelae of SARS-CoV-2 infection: An EHR-based cohort study from the recover program
Environmental Advances.
11
[DOI] 10.1016/j.envadv.2023.100352.
[PMID] 36785842.
2023
Impact of Contextual-Level Social Determinants of Health on Newer Antidiabetic Drug Adoption in Patients with Type 2 Diabetes
International Journal of Environmental Research and Public Health.
20(5)
[DOI] 10.3390/ijerph20054036.
[PMID] 36901047.
2023
Infant Low Birth Weight Prediction Using Graph Embedding Features
International Journal of Environmental Research and Public Health.
20(2)
[DOI] 10.3390/ijerph20021317.
[PMID] 36674072.
2022
Medication‐Related
Osteonecrosis of the Jaw in Cancer Patients: Result from the
OneFlorida
Clinical Research Consortium
Journal of Bone and Mineral Research.
37(12):2466-2471
[DOI] 10.1002/jbmr.4708.
[PMID] 36151778.
2022
A conversational agent system for dietary supplements use.
BMC medical informatics and decision making.
22(Suppl 1)
[DOI] 10.1186/s12911-022-01888-5.
[PMID] 35799177.
2022
A large language model for electronic health records
npj Digital Medicine.
5(1)
[DOI] 10.1038/s41746-022-00742-2.
[PMID] 36572766.
2022
A scoping review of semantic integration of health data and information.
International journal of medical informatics.
165
[DOI] 10.1016/j.ijmedinf.2022.104834.
[PMID] 35863206.
2022
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions.
Artificial intelligence in medicine.
130
[DOI] 10.1016/j.artmed.2022.102326.
[PMID] 35809965.
2022
Assessing the Documentation of Social Determinants of Health for Lung Cancer Patients in Clinical Narratives.
Frontiers in public health.
10
[DOI] 10.3389/fpubh.2022.778463.
[PMID] 35419333.
2022
Assessment of structured data elements for social risk factors.
The American journal of managed care.
28(1):e14-e23
[DOI] 10.37765/ajmc.2022.88816.
[PMID] 35049262.
2022
Associations of Computed Tomography Image-Assessed Adiposity and Skeletal Muscles with Triple-Negative Breast Cancer
Cancers.
14(7)
[DOI] 10.3390/cancers14071846.
[PMID] 35406618.
2022
Barriers and Facilitators of Obtaining Social Determinants of Health of Patients With Cancer Through the Electronic Health Record Using Natural Language Processing Technology: Qualitative Feasibility Study With Stakeholder Interviews
JMIR Formative Research.
6(12)
[DOI] 10.2196/43059.
[PMID] 36574288.
2022
Biases in using social media data for public health surveillance: A scoping review.
International journal of medical informatics.
164
[DOI] 10.1016/j.ijmedinf.2022.104804.
[PMID] 35644051.
2022
Conducting a representative national randomized control trial of tailored clinical decision support for nurses remotely: Methods and implications.
Contemporary clinical trials.
118
[DOI] 10.1016/j.cct.2022.106712.
[PMID] 35235823.
2022
Distributed Quasi-Poisson regression algorithm for modeling multi-site count outcomes in distributed data networks.
Journal of biomedical informatics.
131
[DOI] 10.1016/j.jbi.2022.104097.
[PMID] 35643272.
2022
DLMM as a lossless one-shot algorithm for collaborative multi-site distributed linear mixed models
Nature Communications.
13(1)
[DOI] 10.1038/s41467-022-29160-4.
[PMID] 35354802.
2022
Editorial: Measuring and Analysing Social Determinants of Health in the Era of Big Data.
Frontiers in public health.
10
[DOI] 10.3389/fpubh.2022.902942.
[PMID] 35712296.
2022
Endocrine adherence in male versus female breast cancer: a seer-medicare review.
Breast cancer research and treatment.
192(3):491-499
[DOI] 10.1007/s10549-022-06536-0.
[PMID] 35142938.
2022
Environmental effects on acute exacerbations of respiratory diseases: A real-world big data study.
The Science of the total environment.
806(Pt 1)
[DOI] 10.1016/j.scitotenv.2021.150352.
[PMID] 34555607.
2022
Frailty and risk of mortality in older cancer survivors and adults without a cancer history: Evidence from the National Health and Nutrition Examination Survey, 1999-2014.
Cancer.
128(15):2978-2987
[DOI] 10.1002/cncr.34258.
[PMID] 35608563.
2022
Identifying Patients at Risk of Acute Kidney Injury Among Medicare Beneficiaries With Type 2 Diabetes Initiating SGLT2 Inhibitors: A Machine Learning Approach.
Frontiers in pharmacology.
13
[DOI] 10.3389/fphar.2022.834743.
[PMID] 35359843.
2022
Implementation of a pediatric asthma management program in rural primary care clinics
Journal of Asthma.
1-8
[DOI] 10.1080/02770903.2022.2132954.
2022
Incidence Trends of New-Onset Diabetes in Children and Adolescents Before and During the COVID-19 Pandemic: Findings From Florida
Diabetes.
71(12):2702-2706
[DOI] 10.2337/db22-0549.
[PMID] 36094294.
2022
Intraindividual Reliability of Opportunistic Computed Tomography–Assessed Adiposity and Skeletal Muscle Among Breast Cancer Patients
JNCI Cancer Spectrum.
6(6)
[DOI] 10.1093/jncics/pkac068.
[PMID] 36222575.
2022
Moving from predicting hospital deaths by antibiotic-resistant bloodstream bacteremia toward actionable risk reduction using machine learning on electronic health records.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2022:274-283
[PMID] 35854723.
2022
Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites.
Scientific reports.
12(1)
[DOI] 10.1038/s41598-022-14029-9.
[PMID] 35773438.
2022
Newer glucose-lowering drugs and risk of dementia: A meta-analysis of cardiovascular outcome trials.
Journal of the American Geriatrics Society.
70(9):2719-2722
[DOI] 10.1111/jgs.17895.
[PMID] 35612586.
2022
ODACH: a one-shot distributed algorithm for Cox model with heterogeneous multi-center data.
Scientific reports.
12(1)
[DOI] 10.1038/s41598-022-09069-0.
[PMID] 35459767.
2022
Personalised Lung Cancer Screening (PLuS) study to assess the importance of coexisting chronic conditions to clinical practice and policy: protocol for a multicentre observational study
BMJ Open.
12(6)
[DOI] 10.1136/bmjopen-2022-064142.
[PMID] 35732383.
2022
Polygenic risk of Alzheimer’s disease in the Faroe Islands.
European journal of neurology.
29(8):2192-2200
[DOI] 10.1111/ene.15351.
[PMID] 35384166.
2022
Predictive Modeling for Suicide-Related Outcomes and Risk Factors among Patients with Pain Conditions: A Systematic Review
Journal of Clinical Medicine.
11(16)
[DOI] 10.3390/jcm11164813.
[PMID] 36013053.
2022
Prevalence of Alzheimer’s and Related Dementia Diseases and Risk Factors Among Transgender Adults, Florida, 2012‒2020.
American journal of public health.
112(5):754-757
[DOI] 10.2105/AJPH.2022.306720.
[PMID] 35324265.
2022
Procedural complications associated with invasive diagnostic procedures after lung cancer screening with low-dose computed tomography.
Lung cancer (Amsterdam, Netherlands).
165:141-144
[DOI] 10.1016/j.lungcan.2021.12.020.
[PMID] 35124410.
2022
Protocol for the development of a reporting guideline for causal and counterfactual prediction models in biomedicine
BMJ Open.
12(6)
[DOI] 10.1136/bmjopen-2021-059715.
[PMID] 35725267.
2022
Simulating Colorectal Cancer Trials Using Real-World Data.
JCO clinical cancer informatics.
6
[DOI] 10.1200/CCI.21.00195.
[PMID] 35839432.
2022
Study protocol for a type III hybrid effectiveness-implementation trial to evaluate scaling interoperable clinical decision support for patient-centered chronic pain management in primary care.
Implementation science : IS.
17(1)
[DOI] 10.1186/s13012-022-01217-4.
[PMID] 35841043.
2022
Syndromic Surveillance Systems for Mass Gatherings: A Scoping Review
International Journal of Environmental Research and Public Health.
19(8)
[DOI] 10.3390/ijerph19084673.
[PMID] 35457541.
2022
Temporal Subtyping of Alzheimer’s Disease Using Medical Conditions Preceding Alzheimer’s Disease Onset in Electronic Health Records.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2022:226-235
[PMID] 35854753.
2022
The Impact of Race–Ethnicity and Diagnosis of Alzheimer’s Disease and Related Dementias on Mammography Use
Cancers.
14(19)
[DOI] 10.3390/cancers14194726.
[PMID] 36230648.
2022
The OneFlorida Data Trust: a centralized, translational research data infrastructure of statewide scope
Journal of the American Medical Informatics Association.
29(4):686-693
[DOI] 10.1093/jamia/ocab221.
[PMID] 34664656.
2021
A feasibility trial of parent HPV vaccine reminders and phone-based motivational interviewing.
BMC public health.
21(1)
[DOI] 10.1186/s12889-020-10132-6.
[PMID] 33422047.
2021
A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2021:1225-1233
[PMID] 35309014.
2021
A varied approach to left ventricular assist device follow-up improves cost-effectiveness.
Current medical research and opinion.
37(9):1501-1505
[DOI] 10.1080/03007995.2021.1948395.
[PMID] 34181489.
2021
An efficient and accurate distributed learning algorithm for modeling multi-site zero-inflated count outcomes.
Scientific reports.
11(1)
[DOI] 10.1038/s41598-021-99078-2.
[PMID] 34608222.
2021
An external exposome-wide association study of COVID-19 mortality in the United States.
The Science of the total environment.
768
[DOI] 10.1016/j.scitotenv.2020.144832.
[PMID] 33450687.
2021
Applications of artificial intelligence in drug development using real-world data
Drug Discovery Today.
26(5):1256-1264
[DOI] 10.1016/j.drudis.2020.12.013.
[PMID] 33358699.
2021
Assessing the Impact of Imputation on the Interpretations of Prediction Models: A Case Study on Mortality Prediction for Patients with Acute Myocardial Infarction.
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.
2021:465-474
[PMID] 34457162.
2021
Associations between the chemical composition of PM2.5 and gestational diabetes mellitus
Environmental Research.
198
[DOI] 10.1016/j.envres.2020.110470.
2021
Bagged random causal networks for interventional queries on observational biomedical datasets.
Journal of biomedical informatics.
115
[DOI] 10.1016/j.jbi.2021.103689.
[PMID] 33548542.
2021
Challenges in replicating secondary analysis of electronic health records data with multiple computable phenotypes: A case study on methicillin-resistant Staphylococcus aureus bacteremia infections
International Journal of Medical Informatics.
153
[DOI] 10.1016/j.ijmedinf.2021.104531.
[PMID] 34332468.
2021
Comparing the downstream costs and healthcare utilization associated with the use of low-dose computed tomography (LDCT) in lung cancer screening in patients with and without alzheimer’s disease and related dementias (ADRD).
Current medical research and opinion.
37(10):1731-1737
[DOI] 10.1080/03007995.2021.1953972.
[PMID] 34252317.
2021
Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2021:1264-1273
[PMID] 35308985.
2021
Deep learning models in detection of dietary supplement adverse event signals from Twitter.
JAMIA open.
4(4)
[DOI] 10.1093/jamiaopen/ooab081.
[PMID] 34632323.
2021
Deep propensity network using a sparse autoencoder for estimation of treatment effects
Journal of the American Medical Informatics Association.
28(6):1197-1206
[DOI] 10.1093/jamia/ocaa346.
[PMID] 33594415.
2021
Disparities in Pediatric Patient Portal Activation and Feature Use.
JAMIA open.
4(3)
[DOI] 10.1093/jamiaopen/ooab086.
[PMID] 34604712.
2021
Effects of brief exposure to misinformation about e-cigarette harms on twitter: a randomised controlled experiment
BMJ Open.
11(9)
[DOI] 10.1136/bmjopen-2020-045445.
[PMID] 34470790.
2021
Emotional Responses and Perceived Relative Harm Mediate the Effect of Exposure to Misinformation about E-Cigarettes on Twitter and Intention to Purchase E-Cigarettes among Adult Smokers.
International journal of environmental research and public health.
18(23)
[DOI] 10.3390/ijerph182312347.
[PMID] 34886071.
2021
Evaluation of clustering and topic modeling methods over health-related tweets and emails
Artificial Intelligence in Medicine.
117
[DOI] 10.1016/j.artmed.2021.102096.
[PMID] 34127235.
2021
Examination of Early CNS Symptoms and Severe Coronavirus Disease 2019: A Multicenter Observational Case Series.
Critical care explorations.
3(6)
[DOI] 10.1097/CCE.0000000000000456.
[PMID] 34136827.
2021
Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer’s disease
npj Digital Medicine.
4(1)
[DOI] 10.1038/s41746-021-00452-1.
[PMID] 33990663.
2021
Extracting social determinants of health from electronic health records using natural language processing: a systematic review
Journal of the American Medical Informatics Association.
28(12):2716-2727
[DOI] 10.1093/jamia/ocab170.
[PMID] 34613399.
2021
Federated Learning for Healthcare Informatics.
Journal of healthcare informatics research.
5(1):1-19
[DOI] 10.1007/s41666-020-00082-4.
[PMID] 33204939.
2021
Geographic Variation in Knowledge of Palliative Care Among US Adults: Findings From 2018 Health Information National Trends Survey.
The American journal of hospice & palliative care.
38(3):291-299
[DOI] 10.1177/1049909120946266.
[PMID] 32757758.
2021
Geographic variation in palliative care delivery among patients diagnosed with metastatic lung cancer in the USA: Medicare population-based study.
Supportive care in cancer : official journal of the Multinational Association of Supportive Care in Cancer.
29(2):813-821
[DOI] 10.1007/s00520-020-05549-z.
[PMID] 32495033.
2021
How the clinical research community responded to the COVID-19 pandemic: an analysis of the COVID-19 clinical studies in ClinicalTrials.gov.
JAMIA open.
4(2)
[DOI] 10.1093/jamiaopen/ooab032.
[PMID] 34056559.
2021
Optimizing Identification of People Living with HIV from Electronic Medical Records: Computable Phenotype Development and Validation.
Methods of information in medicine.
60(3-04):84-94
[DOI] 10.1055/s-0041-1735619.
[PMID] 34592777.
2021
Oral cancer knowledge and screening behavior among smokers and non-smokers in rural communities.
BMC cancer.
21(1)
[DOI] 10.1186/s12885-021-08198-5.
[PMID] 33879128.
2021
Propensity score synthetic augmentation matching using generative adversarial networks (PSSAM-GAN).
Computer methods and programs in biomedicine update.
1
[DOI] 10.1016/j.cmpbup.2021.100020.
[PMID] 34386786.
2021
Racial, Ethnic, and Geographic Disparities in Cardiovascular Health Among Women of Childbearing Age in the United States
Journal of the American Heart Association.
10(17)
[DOI] 10.1161/jaha.120.020138.
2021
Real-world experience of carfilzomib-associated cardiovascular adverse events: SEER-Medicare data set analysis.
Cancer medicine.
10(1):70-78
[DOI] 10.1002/cam4.3568.
[PMID] 33169938.
2021
Semantic standards of external exposome data
Environmental Research.
197
[DOI] 10.1016/j.envres.2021.111185.
[PMID] 33901445.
2021
Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320a
PLOS Genetics.
17(12)
[DOI] 10.1371/journal.pgen.1009934.
[PMID] 34914716.
2021
Smokers’ Likelihood to Engage With Information and Misinformation on Twitter About the Relative Harms of e-Cigarette Use: Results From a Randomized Controlled Trial
JMIR Public Health and Surveillance.
7(12)
[DOI] 10.2196/27183.
[PMID] 34931999.
2021
The application of artificial intelligence and data integration in COVID-19 studies: a scoping review
Journal of the American Medical Informatics Association.
28(9):2050-2067
[DOI] 10.1093/jamia/ocab098.
[PMID] 34151987.
2021
The association between cognitive impairment and breast and colorectal cancer screening utilization.
BMC cancer.
21(1)
[DOI] 10.1186/s12885-021-08321-6.
[PMID] 33975576.
2021
The role of sex and rurality in cancer fatalistic beliefs and cancer screening utilization in Florida.
Cancer medicine.
10(17):6048-6057
[DOI] 10.1002/cam4.4122.
[PMID] 34254469.
2021
Transformer-Based Named Entity Recognition for Parsing Clinical Trial Eligibility Criteria.
ACM-BCB … … : the … ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine.
2021
[DOI] 10.1145/3459930.3469560.
[PMID] 34414397.
2021
Validation of Real-World Data-based Endpoint Measures of Cancer Treatment Outcomes.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2021:716-725
[PMID] 35308944.
2021
When text simplification is not enough: could a graph-based visualization facilitate consumers’ comprehension of dietary supplement information?
JAMIA open.
4(1)
[DOI] 10.1093/jamiaopen/ooab026.
[PMID] 33855274.
2020
A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives.
IEEE International Conference on Healthcare Informatics. IEEE International Conference on Healthcare Informatics.
2020
[DOI] 10.1109/ICHI48887.2020.9374369.
[PMID] 33786419.
2020
Ambient Air Pollution and Preeclampsia: Looking Back and Moving Forward.
Hypertension (Dallas, Tex. : 1979).
75(3):618-619
[DOI] 10.1161/HYPERTENSIONAHA.119.13269.
[PMID] 31902251.
2020
An ontology-based documentation of data discovery and integration process in cancer outcomes research
BMC Medical Informatics and Decision Making.
20(S4)
[DOI] 10.1186/s12911-020-01270-3.
[PMID] 33317497.
2020
Are Preregistration and Registered Reports Vulnerable to Hacking?
Epidemiology (Cambridge, Mass.).
31(3)
[DOI] 10.1097/EDE.0000000000001162.
[PMID] 31985501.
2020
Assessing mental health signals among sexual and gender minorities using Twitter data
Health Informatics Journal.
26(2):765-786
[DOI] 10.1177/1460458219839621.
[PMID] 30969146.
2020
Assessing the effect of data integration on predictive ability of cancer survival models
Health Informatics Journal.
26(1):8-20
[DOI] 10.1177/1460458218824692.
[PMID] 30672356.
2020
Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data
Journal of the American Medical Informatics Association.
27(12):1999-2010
[DOI] 10.1093/jamia/ocaa245.
[PMID] 33166397.
2020
Cardiovascular toxicity in patients treated with immunotherapy for metastatic non-small cell lung cancer: A SEER-medicare study: CVD outcomes with the use of ICI in mNSCLC.
Lung cancer (Amsterdam, Netherlands).
150:172-177
[DOI] 10.1016/j.lungcan.2020.10.017.
[PMID] 33186859.
2020
Causal inference and counterfactual prediction in machine learning for actionable healthcare
Nature Machine Intelligence.
2(7):369-375
[DOI] 10.1038/s42256-020-0197-y.
2020
Clinical concept extraction using transformers.
Journal of the American Medical Informatics Association : JAMIA.
27(12):1935-1942
[DOI] 10.1093/jamia/ocaa189.
[PMID] 33120431.
2020
Clinical Trial Generalizability Assessment in the Big Data Era: A Review.
Clinical and translational science.
13(4):675-684
[DOI] 10.1111/cts.12764.
[PMID] 32058639.
2020
COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes.
Journal of the American Medical Informatics Association : JAMIA.
27(9):1437-1442
[DOI] 10.1093/jamia/ocaa145.
[PMID] 32569358.
2020
Detecting associations between dietary supplement intake and sentiments within mental disorder tweets
Health Informatics Journal.
26(2):803-815
[DOI] 10.1177/1460458219867231.
[PMID] 31566452.
2020
Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2020:514-523
[PMID] 33936425.
2020
Explainable artificial intelligence models using real-world electronic health record data: a systematic scoping review.
Journal of the American Medical Informatics Association : JAMIA.
27(7):1173-1185
[DOI] 10.1093/jamia/ocaa053.
[PMID] 32417928.
2020
Exploring Eating Disorder Topics on Twitter: Machine Learning Approach
JMIR Medical Informatics.
8(10)
[DOI] 10.2196/18273.
[PMID] 33124997.
2020
Exploring the semantics in mental health research.
Health informatics journal.
26(2):723-725
[DOI] 10.1177/1460458219896886.
[PMID] 31928305.
2020
Extracting Family History of Patients From Clinical Narratives: Exploring an End-to-End Solution With Deep Learning Models
JMIR Medical Informatics.
8(12)
[DOI] 10.2196/22982.
[PMID] 33320104.
2020
Identifying Clinical Risk Factors for Opioid Use Disorder using a Distributed Algorithm to Combine Real-World Data from a Large Clinical Data Research Network.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2020:1220-1229
[PMID] 33936498.
2020
Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting.
Journal of the American Medical Informatics Association : JAMIA.
27(1):65-72
[DOI] 10.1093/jamia/ocz144.
[PMID] 31504605.
2020
iDISK: the integrated DIetary Supplements Knowledge base.
Journal of the American Medical Informatics Association : JAMIA.
27(4):539-548
[DOI] 10.1093/jamia/ocz216.
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ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.
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Assessing the Validity of a a priori Patient-Trial Generalizability Score using Real-world Data from a Large Clinical Data Research Network: A Colorectal Cancer Clinical Trial Case Study.
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Development of a personalized diagnostic model for kidney stone disease tailored to acute care by integrating large clinical, demographics and laboratory data: the diagnostic acute care algorithm – kidney stones (DACA-KS).
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2010
Prauserella marina sp. nov., isolated from ocean sediment of the South China Sea.
International journal of systematic and evolutionary microbiology.
60(Pt 4):985-989
[DOI] 10.1099/ijs.0.013862-0.
[PMID] 19666793.
2009
Amycolatopsis marina sp. nov., an actinomycete isolated from an ocean sediment.
International journal of systematic and evolutionary microbiology.
59(Pt 3):477-81
[DOI] 10.1099/ijs.0.000026-0.
[PMID] 19244425.
2003
[Experimental study of vasoligation in the treatment and prevention of benign prostatic hyperplasia].
Zhonghua nan ke xue = National journal of andrology.
9(1):20-3
[PMID] 12680325.
A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives
.
[DOI] 10.1101/2020.10.30.20223511.
[PMID] 33173920.
AI-aided dynamic prediction of bleeding and ischemic risk after coronary stenting and subsequent DAPT
.
[DOI] 10.1101/2022.02.05.22270508.
Algorithmic Fairness in Computational Medicine
.
[DOI] 10.1101/2022.01.16.21267299.
An Efficient and Accurate Distributed Learning Algorithm for Modeling Multi-Site Zero- Inflated Count Outcomes
.
[DOI] 10.1101/2020.12.17.20248194.
Assessing the Impact of Imputation on the Interpretations of Prediction Models: A Case Study on Mortality Prediction for Patients with Acute Myocardial Infarction
.
[DOI] 10.1101/2020.06.06.20124347.
Barriers and facilitators of obtaining SDoH of patients with cancer through the EHR using natural language processing technology: A qualitative study (Preprint)
.
[DOI] 10.2196/preprints.43059.
Biomedical Discovery through the integrative Biomedical Knowledge Hub (iBKH)
.
[DOI] 10.1101/2021.03.12.21253461.
Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups
.
[DOI] 10.1101/2020.08.04.20168161.
Development of a Web-Based Crowdsourcing-Integrated Semantic Text Annotation Tool to Assist in Building a Mental Health Knowledge Base: User-Centered Design Approach (Preprint)
.
[DOI] 10.2196/preprints.18293.
Distributed Counterfactual Modeling Approach for Investigating Hospital-Associated Racial Disparities in COVID-19 Mortality
.
[DOI] 10.1101/2021.09.14.21263596.
DR-VIDAL – Doubly Robust Variational Information-theoretic Deep Adversarial Learning for Counterfactual Prediction and Treatment Effect Estimation
.
[DOI] 10.21203/rs.3.rs-1055169/v1.
dynaPhenoM: Dynamic Phenotype Modeling from Longitudinal Patient Records Using Machine Learning
.
[DOI] 10.1101/2021.11.01.21265725.
Efficacy and Effectiveness of Mobile Health Technologies for Facilitating Physical Activity in Adolescents: Scoping Review (Preprint)
.
[DOI] 10.2196/preprints.11847.
Exploring Eating Disorder Topics on Twitter: Machine Learning Approach (Preprint)
.
[DOI] 10.2196/preprints.18273.
Exploring the Feasibility of Using Real-World Data from a Large Clinical Data Research Network to Simulate Clinical Trials of Alzheimer’s Disease
.
[DOI] 10.1101/2020.08.16.20167577.
Exploring the Feasibility of Using Real-World Data from a Large Clinical Data Research Network to Simulate Clinical Trials of Alzheimer’s Disease
.
[DOI] 10.1101/2020.06.03.20121491.
Extracting Family History of Patients From Clinical Narratives: Exploring an End-to-End Solution With Deep Learning Models (Preprint)
.
[DOI] 10.2196/preprints.22982.
GatorTron: A Large Language Model for Clinical Natural Language Processing
.
[DOI] 10.1101/2022.02.27.22271257.
How the clinical research community responded to the COVID-19 pandemic: An analysis of the COVID-19 clinical studies in ClinicalTrials.gov
.
[DOI] 10.1101/2020.09.16.20195552.
[PMID] 32995807.
Identifying Contextual and Spatial Risk Factors for Post-Acute Sequelae of SARS-CoV-2 Infection: An EHR-based Cohort Study from the RECOVER Program
.
[DOI] 10.1101/2022.10.13.22281010.
[PMID] 36263067.
Integrative analyses of multimodal clinical, neuroimaging, genetic, and transcriptomic data identify subtypes and potential treatments for heterogeneous Parkinson’s disease progression
.
[DOI] 10.1101/2021.07.18.21260731.
Leverage Real-world Longitudinal Data in Large Clinical Research Networks for Alzheimer’s Disease and Related Dementia (ADRD)
.
[DOI] 10.1101/2020.08.03.20167619.
Machine learning enabled subgroup analysis with real-world data to inform better clinical trial design
.
[DOI] 10.1101/2021.05.11.21257024.
Machine Learning for Identifying Data-Driven Subphenotypes of Incident Post-Acute SARS-CoV-2 Infection Conditions with Large Scale Electronic Health Records: Findings from the RECOVER Initiative
.
[DOI] 10.1101/2022.05.21.22275412.
[PMID] 35665007.
Measurement of Semantic Textual Similarity in Clinical Texts: Comparison of Transformer-Based Models (Preprint)
.
[DOI] 10.2196/preprints.19735.
Parsing Clinical Trial Eligibility Criteria for Cohort Query by a Multi-Input Multi-Output Sequence Labeling Model
.
[DOI] 10.1101/2021.11.18.21266533.
Prevalence of Multiple Chronic Conditions Among Older Adults in Florida and the United States: Comparative Analysis of the OneFlorida Data Trust and National Inpatient Sample
.
[DOI] 10.2196/preprints.8961.
Prevalence of Multiple Chronic Conditions Among Older Adults in Florida and the United States: Comparative Analysis of the OneFlorida Data Trust and National Inpatient Sample
.
[DOI] 10.2196/preprints.8961.a.
Protocol for Development of a Reporting Guideline for Causal and Counterfactual Prediction Models
.
[DOI] 10.1101/2021.11.19.21266604.
Smokers’ Likelihood to Engage With Information and Misinformation on Twitter About the Relative Harms of e-Cigarette Use: Results From a Randomized Controlled Trial (Preprint)
.
[DOI] 10.2196/preprints.27183.
Towards Formal Computable Representation of Clinical Trial Eligibility Criteria for Alzheimer’s Disease
.
[DOI] 10.1101/2022.03.21.22272707.
Unraveling COVID-19: a large-scale characterization of 4.5 million COVID-19 cases using CHARYBDIS
.
[DOI] 10.21203/rs.3.rs-279400/v1.
[PMID] 33688639.
Using Real-World Data to Rationalize Clinical Trials Eligibility Criteria Design: A Case Study of Alzheimer’s Disease Trials
.
[DOI] 10.1101/2020.08.02.20166629.
Using Social Media Data to Understand the Impact of Promotional Information on Laypeople�s Discussions: A Case Study of Lynch Syndrome (Preprint)
.
[DOI] 10.2196/preprints.9266.
Validate Real-World Data-based Endpoint Measures of Cancer Treatment Outcomes
.
[DOI] 10.1101/2021.06.10.21258706.
Grants
Feb 2023
ACTIVE
Disparities of Alzheimer's disease progression in sexual and gender minorities
Role: Principal Investigator
Funding: NATL INST OF HLTH NIA
Feb 2023
ACTIVE
VA IPA – Geospatial analysis of racial and rural-nonrural disparities in adherence to follow-up lung cancer screening recommendations in Veterans
Role: Principal Investigator
Funding: US DEPT OF VET AFF GAINESVILLE MED CTR
Sep 2022
ACTIVE
Workshop on AI Governance in For-profit and Not-for-profit Organizations
Role: Co-Project Director/Principal Investigator
Funding: NATL SCIENCE FOU
Sep 2022
– Dec 2022
Assessing Barriers and Facilitators for Participating Structured Lifestyle Intervention and Its Real-world Effectiveness and Cost-effectiveness among US Veterans
Role: Co-Investigator
Funding: CTRS FOR DISEASE CONTROL AND PREVENTION
Aug 2022
ACTIVE
PANDA-MSD: Predictive Analytics via Networked Distributed Algorithms for Multi-System Diseases
Role: Principal Investigator
Funding: UNIV OF PENNSYLVANIA
via NATL INST OF HLTH NCATS
Jul 2022
ACTIVE
Building Equity Improvement into Quality Improvement in the use of New Glucose-lowering Drugs (GLDs) through Individualized Drug Value Assessment in People with Diabetes
Role: Co-Investigator
Funding: NATL INST OF HLTH NIDDK
Jul 2022
ACTIVE
Addressing Disparities of Care in Lung Cancer Patients
Role: Principal Investigator
Funding: GENENTECH INC
Jul 2022
ACTIVE
Risk of adverse cardiovascular events in breast cancer patients receiving systemic adjuvant therapy: impact of comorbidity burden
Role: Co-Investigator
Funding: FL BREAST CANCER FOU
Jul 2022
ACTIVE
Social Determinants Underlying Disparities in Heart Failure Treatment and Outcomes
Role: Co-Investigator
Funding: PHARMA RES AND MANUFACTURERS OF AMERICA
Mar 2022
ACTIVE
Using Machine Learning with Real-World Data to Identify Autism Risk in Children
Role: Co-Investigator
Funding: UNIV OF SOUTHERN CALIFORNIA
via NATL INST OF HLTH NIMH
Mar 2022
ACTIVE
Computational Drug Repurposing for AD/ADRD with Integrative Analysis of Real-World Data and Biomedical Knowledge
Role: Principal Investigator
Funding: WEILL MED COLLEGE OF CORNELL UNIV
via NATL INST OF HLTH NIA
Jan 2022
ACTIVE
OneFlorida+ Phase 3 Clinical Research Network
Role: Co-Investigator
Funding: PATIENT-CENTERED OUTCOMES RES INST
Dec 2021
ACTIVE
The External Exposome and COVID-19 Severity and Mortality
Role: Principal Investigator
Funding: BRIGHAM AND WOMENS HOSPITAL
via NATL INST OF HLTH NIEHS
Oct 2021
ACTIVE
RESEARCHING COVID TO ENHANCE RECOVERY (RECOVER) INITIATIVE
Role: Principal Investigator
Funding: WEILL MED COLLEGE OF CORNELL UNIV
via NATL INST OF HLTH NHLBI
Oct 2021
– Sep 2022
Identification and mitigation of structured electronic health record source data mapping issues (DI3)
Role: Principal Investigator
Funding: HARVARD PILGRIM HEALTHCARE
via US FOOD AND DRUG ADMN
Sep 2021
ACTIVE
Computable social factor phenotyping using EHR and HIE data
Role: Co-Investigator
Funding: INDIANA UNIV
via AGCY HEALTHCARE RES AND QUALITY
Sep 2021
ACTIVE
Scaling Interoperable Clinical Decision Support for Patient-Centered Chronic Pain Care
Role: Co-Investigator
Funding: AGCY HEALTHCARE RES AND QUALITY
Jul 2021
ACTIVE
Developing and Evaluating a Machine-Learning Opioid Prediction & Risk-Stratification E-Platform (DEMONSTRATE)
Role: Co-Investigator
Funding: NATL INST OF HLTH NIDA
Jul 2021
ACTIVE
Comparative Effectiveness Research for Neuroendocrine Tumors (CER-NET)
Role: Other
Funding: UNIV OF IOWA
via PATIENT-CENTERED OUTCOMES RES INST
Jun 2021
ACTIVE
Personalized screening for lung cancer: the importance of co-existing chronic conditions to clinical practice and policy
Role: Co-Investigator
Funding: NATL INST OF HLTH NCI
May 2021
ACTIVE
Harmonizing and Integrating Nursing Data into Multidisciplinary Datasets to Evaluate Hospital Care and Readmissions of Older Adults with Alzheimers Disease and Alzheimers Disease-Related Dementias
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
May 2021
– Apr 2022
Evaluating Public Perception of Pesticides Using Social Media Data Analysis
Role: Co-Investigator
Funding: SYNGENTA CROP PROTECTION LLC
Apr 2021
ACTIVE
Advancing Interdisciplinary Science of Aging through Identification of Iatrogenic Complications: The UF EHR Clinical Data Infrastructure for Enhanced Patient Safety among the Elderly (UF-ECLIPSE)
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
Apr 2021
ACTIVE
Optimizing the Population Representativeness of Older Adults in Cancer Trials
Role: Principal Investigator
Funding: NATL INST OF HLTH NCI
Apr 2021
ACTIVE
Advancing Drug Repositioning for Alzheimers Disease using Real-world Data
Role: Principal Investigator
Funding: NATL INST OF HLTH NIA
Dec 2020
– Nov 2022
Novel, High-Impact Studies Evaluating Health System and Healthcare Professional Responsiveness to COVID-19
Role: Co-Investigator
Funding: AGCY HEALTHCARE RES AND QUALITY
Sep 2020
ACTIVE
Using Real-world Data to Assess the Burden of Diabetes in Children and Adolescents in Florida
Role: Principal Investigator
Funding: CTRS FOR DISEASE CONTROL AND PREVENTION
Sep 2020
ACTIVE
Linking VA and non-VA data to study the risk of suicide in chronic pain patients
Role: Principal Investigator
Funding: WEILL MED COLLEGE OF CORNELL UNIV
via NATL INST OF HLTH NIMH
Aug 2020
– Sep 2021
The External Exposome and COVID-19 Severity
Role: Principal Investigator
Funding: NATL INST OF HLTH NIEHS
Aug 2020
ACTIVE
Using Electronic Health Records from a Large Clinical Data Research Network to Understand Cancer Burden and Cancer Risks Among Transgender and Gender Nonconforming (TGNC) Individuals
Role: Principal Investigator
Funding: NATL INST OF HLTH NCI
Aug 2020
ACTIVE
Optimizing the Population Representativeness of Older Adults in Alzheimer's Disease and Related Dementia Clinical Trials
Role: Principal Investigator
Funding: NATL INST OF HLTH NIA
Jul 2020
ACTIVE
Sunshine Portal Year 2
Role: Co-Investigator
Funding: FL OFFICE OF EARLY LEARNING
via ADMN FOR CHILDREN AND FAMILIES
Jun 2020
ACTIVE
1Florida Alzheimers Disease Research Center
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
Apr 2020
– Sep 2020
IBM Task Order – Development of New and Innovative Methods for Automated Reporting for CBER-Regulated Biological Products – FDA Task Order 2, Order # 75F40119F19002
Role: Co-Investigator
Funding: IBM CORP
via US FOOD AND DRUG ADMN
Jan 2020
– Aug 2020
The provision of research and evaluation to determine the short and long-term human health impacts from harmful algal blooms (HABs)
Role: Co-Investigator
Funding: FL DEPT OF HLTH
Jan 2020
ACTIVE
Extracting information from clinical narratives for Clinical Outcomes Research
Role: Co-Project Director/Principal Investigator
Funding: PATIENT-CENTERED OUTCOMES RES INST
Jan 2020
ACTIVE
The benefits and harms of lung cancer screening in Florida
Role: Principal Investigator
Funding: NATL INST OF HLTH NCI
Jan 2020
– Mar 2020
Data Science in Health Informatics Workshop with Deep Learning Winter 2020
Role: Co-Investigator
Funding: *NORTHEASTERN UNIVERSITY OF CHINA
Dec 2019
ACTIVE
Artificial Intelligence-aided Personalization on Dual Antiplatelet Therapy for Patients Underwent Coronary Stent Implantation Using Large-scale Electronic Health Records
Role: Principal Investigator
Funding: UNIV OF TEXAS HLTH SCI CTR AT HOUSTON
via AMER HEART ASSOCIATION
Oct 2019
ACTIVE
Clinically-Efficient Strategies to Address Tobacco Smoke Exposure in Pediatric Practice
Role: Co-Investigator
Funding: FL DEPT OF HLTH BIOMED RES PGM/J&E KING
Sep 2019
ACTIVE
Tailored Clinical Decision Support Formats Designed to Improve Palliative Care for Cancer and Chronically Ill Patients: A Pre-Clinical Test
Role: Co-Investigator
Funding: NATL INST OF HLTH NINR
Jul 2019
ACTIVE
Text and Talk: A multi-level intervention to increase provider HPV vaccine recommendation effectiveness
Role: Co-Investigator
Funding: NATL INST OF HLTH NCI
Jul 2019
– Jun 2022
UF Health Cancer Center Pilot Projects funded by UF Foundation Allocated Funds
Role: Project Manager
Funding: UF FOUNDATION
Jul 2019
– Sep 2019
Data Science in Health Informatics Workshop Summer 2019
Role: Principal Investigator
Funding: *NORTHEASTERN UNIVERSITY OF CHINA
Apr 2019
– Mar 2021
Advancing Interdisciplinary Science of Aging through Identification of Iatrogenic Complications: The UF EHR Clinical Data Infrastructure for Enhanced Patient Safety among the Elderly (UF-ECLIPSE)
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
Feb 2019
– Feb 2021
Utilizing Data from the Electronic Medical Record to Predict Alzheimers and Dementia Risk
Role: Co-Investigator
Funding: FL DEPT OF HLTH ED ETHEL MOORE ALZHEIMER
Jan 2019
– Nov 2022
Systematic Analysis of Clinical Study Generalizability Assessment Methods with Informatics
Role: Principal Investigator
Funding: FL STATE UNIV
via NATL INST OF HLTH NIA
Dec 2018
– Feb 2019
Data Science in Health Informatics Workshop Winter 2019
Role: Principal Investigator
Funding: *NORTHEASTERN UNIVERSITY OF CHINA
Sep 2018
ACTIVE
Using PCORnet to Compare Blood Pressure Control Strategies
Role: Other
Funding: UNIV OF CALIFORNIA SAN FRANCISCO
via PATIENT-CENTERED OUTCOMES RES INST
Jul 2018
ACTIVE
Implementing a Guidelines-Based M-Health Intervention for High Risk Asthma Patients
Role: Principal Investigator
Funding: ARKANSAS CHILDRENS RESEARCH INSTITUTE
via NATL INST OF HLTH NINR
Jun 2018
– Dec 2018
2018 Data Science in Health Informatics Summer Workshop
Role: Principal Investigator
Funding: *NORTHEASTERN UNIVERSITY OF CHINA
Dec 2017
– Aug 2018
The Mid-South CDRN
Role: Co-Investigator
Funding: VANDERBILT UNIVERSITY MEDICAL CENTER
via PATIENT-CENTERED OUTCOMES RES INST
Sep 2017
– Aug 2022
A Person-Centric Prediction Model of Job Loss based on Social Media Data and Linguistic and Linguistic Analytics
Role: Co-Project Director/Principal Investigator
Funding: NATL SCIENCE FOU
Nov 2016
– Oct 2017
Planning for congenital Zika syndrome surveillance in PCORnet and Sentinel
Role: Co-Investigator
Funding: PATIENT-CENTERED OUTCOMES RES INST
Oct 2016
– Mar 2020
FL's Next Gen of Prescription Drug Related Surveillance: Data into Insights that Enhance PDMP Best Practices
Role: Co-Investigator
Funding: US DEPT OF JUSTICE
Sep 2016
– Jun 2021
Improving Patient Reported Outcome Data for Research through Seamless Integration of the PROMIS Toolkit into EHR Workflows
Role: Principal Investigator
Funding: NORTHWESTERN UNIV
via NATL INST OF HLTH NCATS
Aug 2016
– Dec 2021
Methods and Software for Lifecourse Epidemiology Data and Sample Size Analysis
Role: Co-Investigator
Funding: UNIV OF COLORADO DENVER & ANSCHUTZ MED
via NATL INST OF HLTH NIGMS
Feb 2015
ACTIVE
UF Health Cancer Center Pilot Project Grants funded through the Florida Consortium of National Cancer Institute Centers Program
Role: Project Manager
Funding: UF HEALTH SHANDS HOSPITAL
Education
Ph.D. – Integrated Computing
2010
·
University of Arkansas at Little Rock
M.S. – Computer Science
2008
·
University of Arkansas at Little Rock
B.S. – Architectural Environment & Equipment Engineering
2005
·
Tongji University
Contact Details
Phones:
- Business:
- (352) 273-8878
Emails:
- Business:
- bianjiang@ufl.edu
Addresses:
- Business Mailing:
-
PO Box 100177
2197 MOWRY RD STE 122
GAINESVILLE FL 32610