Jiang Bian, Ph.D.
Professor And Division Director Of Biomedical Informatics; Chief Data Scientist & Chief Research Information Officer, UF Health
Department:
MD-HOBI-BIOMED INFORMATICS
Business Phone:
(352) 273-8878
Business Email:
bianjiang@ufl.edu
About Jiang Bian
Biomedical Informatics is an interdisciplinary field, where the central theme is to explore the effective uses of data, information, and knowledge for scientific inquiry, problem-solving, and decision making, motived by efforts to import human health. I have a diverse yet strong multi-disciplinary background in data integration, semantic web, machine learning, natural language processing, social media analysis, network science, data privacy, and software engineering. Nevertheless, my expertise and background serve an overarching theme: data science with heterogeneous data, information and knowledge resources.
I currently serve as the Chief Data Scientist and Chief Research Information Officer for UF Health, Division Chief of Biomedical Informatics in Health Outcomes & Biomedical Informatics, Director of the Biomedical Informatics Program for the UF Clinical and Translational Science Institute (CTSI; https://www.ctsi.ufl.edu/about/ctsi-programs/biomedical-informatics/), Director of Cancer Informatics Shared Resource (and its eHealth Core program http://bit.ly/36IBw5s jointly supported by the UF CTSI), and the Chief Data Scientist for the OneFlorida+ Clinical Research Consortium (https://onefloridaconsortium.org/).
Additional Positions:
Chief Research Information Officer
2023 – Current
·
University of Florida Health
Director of Biomedical Informatics Program
2023 – Current
·
Clinical and Translational Science Institute, UF
Division Chief of Biomedical Informatics
2023 – Current
·
Health Outcomes & Biomedical Informatics, College of Medicine, UF
Chief Data Scientist
2022 – Current
·
University of Florida Health
Chief Data Scientist
2022 – Current
·
OneFlorida+ Clinical Research Consortium
Director of Cancer Informatics Shared Resource
2018 – Current
·
UF Health Cancer Center
Associate Director of Biomedical Informatics Program
2021 – 2023
·
Clinical and Translational Science Institute, UF
Teaching Profile
Courses Taught
2020,2022
GMS6850 Foundations of Biomedical Informatics
2018,2020-2022,2022
GMS6806 Security and Privacy for Clinical Research
2015-2018
GMS6803 Data Science for Clinical Research
2018
GMS7979 Advanced Research
2018
GMS7980 Research for Doctoral Dissertation
2018
NGR7980 Research for Doctoral Dissertation
2017-2018
NGR7979 Advanced Research
2016
GMS6090 Research in Medical Sciences
2015
GMS6888 Mentored Research Hop
Research Profile
I have a diverse yet strong multi-disciplinary background. Nevertheless, my expertise and background serve an overarching theme: data science with heterogeneous data, information and knowledge resources. My research areas can be divided into two logical sections under this overarching theme: (1) data-driven medicine—applications of informatics techniques, including AI/ML methods in medicine on solving big heterogeneous data problems, providing insights into health-related behavior and health outcomes of various populations and finding ways to develop interventions that promote public and consumer health; and (2) development of novel informatics methods, tools, and systems to support clinical and clinical research activities such as tools for data integration and harmonization, clinical trial design, and cohort discovery.
Google Scholar: https://scholar.google.com/citations?hl=en&user=ysr–voAAAAJ&view_op=list_works&sortby=pubdate
Areas of Interest
- Cancer Informatics
- Social media
- data privacy in healthcare
- data science
- eHealth and user-centered design
- semantic web
Open Researcher and Contributor ID (ORCID)
0000-0002-2238-5429
Publications
2024
Identifying demographic and home features influencing older adults’ home functioning by using machine learning models.
Archives of gerontology and geriatrics.
116
[DOI] 10.1016/j.archger.2023.105149.
[PMID] 37567096.
2023
A Natural Language Processing Algorithm for Classifying Suicidal Behaviors in Alzheimer’s Disease and Related Dementia Patients: Development and Validation Using Electronic Health Records Data.
medRxiv : the preprint server for health sciences.
[DOI] 10.1101/2023.07.21.23292976.
[PMID] 37546764.
2023
A spatial and contextual exposome-wide association study and polyexposomic score of COVID-19 hospitalization
Exposome.
3(1)
[DOI] 10.1093/exposome/osad005.
[PMID] 37089437.
2023
A study of generative large language model for medical research and healthcare
npj Digital Medicine.
6(1)
[DOI] 10.1038/s41746-023-00958-w.
[PMID] 37973919.
2023
Allostatic load and risk of all-cause, cancer-specific, and cardiovascular mortality in older cancer survivors: an analysis of the National Health and Nutrition Examination Survey 1999-2010.
Aging and cancer.
4(2):74-84
[DOI] 10.1002/aac2.12064.
[PMID] 37576467.
2023
An Opinion on ChatGPT in Health Care-Written by Humans Only.
Journal of nuclear medicine : official publication, Society of Nuclear Medicine.
64(5):701-703
[DOI] 10.2967/jnumed.123.265687.
[PMID] 37055219.
2023
Application of a practice-based approach in variable selection for a prediction model development study of hospital-induced delirium.
BMC medical informatics and decision making.
23(1)
[DOI] 10.1186/s12911-023-02278-1.
[PMID] 37704994.
2023
Assess the documentation of cognitive tests and biomarkers in electronic health records via natural language processing for Alzheimer’s disease and related dementias.
International journal of medical informatics.
170
[DOI] 10.1016/j.ijmedinf.2022.104973.
[PMID] 36577203.
2023
Assessing the impact of privacy-preserving record linkage on record overlap and patient demographic and clinical characteristics in PCORnet®, the National Patient-Centered Clinical Research Network
Journal of the American Medical Informatics Association.
30(3):447-455
[DOI] 10.1093/jamia/ocac229.
[PMID] 36451264.
2023
Biomedical discovery through the integrative biomedical knowledge hub (iBKH).
iScience.
26(4)
[DOI] 10.1016/j.isci.2023.106460.
[PMID] 37020958.
2023
Cancer incidence after asthma diagnosis: Evidence from a large clinical research network in the United States.
Cancer medicine.
12(10):11871-11877
[DOI] 10.1002/cam4.5875.
[PMID] 36999938.
2023
Challenges in Adopting Artificial Intelligence to Improve Healthcare Systems and Outcomes in Thailand
Healthcare Informatics Research.
29(3):280-282
[DOI] 10.4258/hir.2023.29.3.280.
[PMID] 37591683.
2023
Classification of Benign and Malignant Renal Tumors Based on CT Scans and Clinical Data Using Machine Learning Methods
Informatics.
10(3)
[DOI] 10.3390/informatics10030055.
2023
Clinical concept and relation extraction using prompt-based machine reading comprehension
Journal of the American Medical Informatics Association.
30(9):1486-1493
[DOI] 10.1093/jamia/ocad107.
[PMID] 37316988.
2023
Contextualized medication information extraction using Transformer-based deep learning architectures.
Journal of biomedical informatics.
142
[DOI] 10.1016/j.jbi.2023.104370.
[PMID] 37100106.
2023
Data-driven analysis to understand long COVID using electronic health records from the RECOVER initiative
Nature Communications.
14(1)
[DOI] 10.1038/s41467-023-37653-z.
[PMID] 37029117.
2023
Data-driven identification of post-acute SARS-CoV-2 infection subphenotypes
Nature Medicine.
29(1):226-235
[DOI] 10.1038/s41591-022-02116-3.
[PMID] 36456834.
2023
Disparities Contributing to Late-Stage Diagnosis of Lung, Colorectal, Breast, and Cervical Cancers: Rural and Urban Poverty in Florida
Cancers.
15(21)
[DOI] 10.3390/cancers15215226.
[PMID] 37958400.
2023
Early prediction of Alzheimer’s disease and related dementias using real‐world electronic health records
Alzheimer's & Dementia.
19(8):3506-3518
[DOI] 10.1002/alz.12967.
2023
Ethnic Variations in Cardiovascular and Renal Outcomes From Newer Glucose‐Lowering Drugs: A Meta‐Analysis of Randomized Outcome Trials
Journal of the American Heart Association.
12(10)
[DOI] 10.1161/jaha.122.026791.
2023
Evaluating the perceptions of pesticide use, safety, and regulation and identifying common pesticide-related topics on Twitter.
Integrated environmental assessment and management.
19(6):1581-1599
[DOI] 10.1002/ieam.4777.
[PMID] 37070476.
2023
Evaluation of a Computable Phenotype for Successful Cognitive Aging.
Mayo Clinic proceedings. Innovations, quality & outcomes.
7(4):212-221
[DOI] 10.1016/j.mayocpiqo.2023.04.006.
[PMID] 37304063.
2023
Excess burden of respiratory and abdominal conditions following COVID-19 infections during the ancestral and Delta variant periods in the United States: An EHR-based cohort study from the RECOVER Program.
medRxiv : the preprint server for health sciences.
[DOI] 10.1101/2023.02.15.23286012.
[PMID] 36865304.
2023
Eye Rubbing in Chinese Patients With Keratoconus: A Multicenter Analysis.
Journal of refractive surgery (Thorofare, N.J. : 1995).
39(10):712-718
[DOI] 10.3928/1081597X-20230831-04.
[PMID] 37824304.
2023
Genetic Testing for Cancer Risk and Perceived Importance of Genetic Information Among US Population by Race and Ethnicity: a Cross-sectional Study.
Journal of racial and ethnic health disparities.
1-13
[DOI] 10.1007/s40615-023-01526-4.
[PMID] 36689121.
2023
Heterogeneous treatment effects of metformin on risk of dementia in patients with type 2 diabetes: A longitudinal observational study.
Alzheimer's & dementia : the journal of the Alzheimer's Association.
[DOI] 10.1002/alz.13480.
[PMID] 37830443.
2023
Identification of Outcome-Oriented Progression Subtypes from Mild Cognitive Impairment to Alzheimer’s Disease Using Electronic Health Records.
medRxiv : the preprint server for health sciences.
[DOI] 10.1101/2023.07.27.23293270.
[PMID] 37577594.
2023
Identifying environmental risk factors for post-acute sequelae of SARS-CoV-2 infection: An EHR-based cohort study from the recover program
Environmental Advances.
11
[DOI] 10.1016/j.envadv.2023.100352.
[PMID] 36785842.
2023
Impact of Contextual-Level Social Determinants of Health on Newer Antidiabetic Drug Adoption in Patients with Type 2 Diabetes
International Journal of Environmental Research and Public Health.
20(5)
[DOI] 10.3390/ijerph20054036.
[PMID] 36901047.
2023
Implementation of a pediatric asthma management program in rural primary care clinics
Journal of Asthma.
60(6):1080-1087
[DOI] 10.1080/02770903.2022.2132954.
[PMID] 36194428.
2023
Individual and social determinants of adherence to sodium-glucose cotransporter 2 inhibitor therapy: A trajectory analysis.
Journal of managed care & specialty pharmacy.
29(11):1242-1251
[DOI] 10.18553/jmcp.2023.29.11.1242.
[PMID] 37889868.
2023
Infant Low Birth Weight Prediction Using Graph Embedding Features
International Journal of Environmental Research and Public Health.
20(2)
[DOI] 10.3390/ijerph20021317.
[PMID] 36674072.
2023
Introduction to Radiomics and Artificial Intelligence: A Primer for Radiologists.
Seminars in roentgenology.
58(2):152-157
[DOI] 10.1053/j.ro.2023.02.002.
[PMID] 37087135.
2023
Leveraging natural language processing to identify eligible lung cancer screening patients with the electronic health record.
International journal of medical informatics.
177
[DOI] 10.1016/j.ijmedinf.2023.105136.
[PMID] 37392712.
2023
Lung cancer screening adherence among people living with and without HIV: An analysis of an integrated health system in Florida, United States (2012-2021).
Preventive medicine reports.
35
[DOI] 10.1016/j.pmedr.2023.102334.
[PMID] 37546581.
2023
Lung Cancer Screening Adherence Among People with HIV Treated at an Integrated Health System in Florida.
AIDS research and human retroviruses.
39(9):482-484
[DOI] 10.1089/AID.2022.0158.
[PMID] 37132600.
2023
Machine learning enabled subgroup analysis with real-world data to inform clinical trial eligibility criteria design.
Scientific reports.
13(1)
[DOI] 10.1038/s41598-023-27856-1.
[PMID] 36635438.
2023
Methodological Challenges in Spatial and Contextual Exposome-Health Studies.
Critical reviews in environmental science and technology.
53(7):827-846
[DOI] 10.1080/10643389.2022.2093595.
[PMID] 37138645.
2023
N6-methyladenosine in 7SK small nuclear RNA underlies RNA polymerase II transcription regulation.
Molecular cell.
83(21):3818-3834.e7
[DOI] 10.1016/j.molcel.2023.09.020.
[PMID] 37820733.
2023
Newer glucose-lowering drugs and risk of dementia: A systematic review and meta-analysis of observational studies.
Journal of the American Geriatrics Society.
71(7):2096-2106
[DOI] 10.1111/jgs.18306.
[PMID] 36821780.
2023
Optimizing Dynamic Antibiotic Treatment Strategies against Invasive Methicillin-Resistant Staphylococcus Aureus Infections using Causal Survival Forests and G-Formula on Statewide Electronic Health Record Data.
Proceedings of machine learning research.
218:98-115
[PMID] 37854935.
2023
Patient-Provider Discussion About Lung Cancer Screening by Race and Ethnicity: Implications for Equitable Uptake of Lung Cancer Screening.
Clinical lung cancer.
[DOI] 10.1016/j.cllc.2023.08.013.
[PMID] 37673782.
2023
Pediatric and adult asthma clinical phenotypes: a real world, big data study based on acute exacerbations.
The Journal of asthma : official journal of the Association for the Care of Asthma.
60(5):1000-1008
[DOI] 10.1080/02770903.2022.2119865.
[PMID] 36039465.
2023
Predicting the Risk of Alzheimer’s Disease and Related Dementia in Patients with Mild Cognitive Impairment Using a Semi-Competing Risk Approach
Informatics.
10(2)
[DOI] 10.3390/informatics10020046.
2023
The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records
Journal of the American Medical Informatics Association.
[DOI] 10.1093/jamia/ocad194.
2023
Unraveling Racial Disparities in Supportive Care Medication Use among End-of-Life Pancreatic Cancer Patients: Focus on Pain Management and Psychiatric Therapies
Cancer Epidemiology, Biomarkers & Prevention.
OF1-OF8
[DOI] 10.1158/1055-9965.epi-23-0251.
2023
Variational Temporal Deconfounder for Individualized Treatment Effect Estimation with Longitudinal Observational Data.
Research square.
[DOI] 10.21203/rs.3.rs-2536079/v1.
[PMID] 36798248.
2023
Workshop on Applied Data Science for Healthcare: Applications and New Frontiers of Generative Models for Healthcare
Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining.
[DOI] 10.1145/3580305.3599225.
2022
Medication‐Related Osteonecrosis of the Jaw in Cancer Patients: Result from the OneFlorida Clinical Research Consortium
Journal of Bone and Mineral Research.
37(12):2466-2471
[DOI] 10.1002/jbmr.4708.
[PMID] 36151778.
2022
A conversational agent system for dietary supplements use.
BMC medical informatics and decision making.
22(Suppl 1)
[DOI] 10.1186/s12911-022-01888-5.
[PMID] 35799177.
2022
A large language model for electronic health records
npj Digital Medicine.
5(1)
[DOI] 10.1038/s41746-022-00742-2.
[PMID] 36572766.
2022
A Preliminary Study of Extracting Pulmonary Nodules and Nodule Characteristics from Radiology Reports Using Natural Language Processing.
IEEE International Conference on Healthcare Informatics. IEEE International Conference on Healthcare Informatics.
2022:618-619
[DOI] 10.1109/ichi54592.2022.00125.
[PMID] 36168559.
2022
A scoping review of semantic integration of health data and information.
International journal of medical informatics.
165
[DOI] 10.1016/j.ijmedinf.2022.104834.
[PMID] 35863206.
2022
Algorithmic fairness in computational medicine.
EBioMedicine.
84
[DOI] 10.1016/j.ebiom.2022.104250.
[PMID] 36084616.
2022
Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions.
Artificial intelligence in medicine.
130
[DOI] 10.1016/j.artmed.2022.102326.
[PMID] 35809965.
2022
Assessing the Documentation of Social Determinants of Health for Lung Cancer Patients in Clinical Narratives.
Frontiers in public health.
10
[DOI] 10.3389/fpubh.2022.778463.
[PMID] 35419333.
2022
Assessment of structured data elements for social risk factors.
The American journal of managed care.
28(1):e14-e23
[DOI] 10.37765/ajmc.2022.88816.
[PMID] 35049262.
2022
Associations of Computed Tomography Image-Assessed Adiposity and Skeletal Muscles with Triple-Negative Breast Cancer
Cancers.
14(7)
[DOI] 10.3390/cancers14071846.
[PMID] 35406618.
2022
Barriers and Facilitators of Obtaining Social Determinants of Health of Patients With Cancer Through the Electronic Health Record Using Natural Language Processing Technology: Qualitative Feasibility Study With Stakeholder Interviews
JMIR Formative Research.
6(12)
[DOI] 10.2196/43059.
[PMID] 36574288.
2022
Biases in using social media data for public health surveillance: A scoping review.
International journal of medical informatics.
164
[DOI] 10.1016/j.ijmedinf.2022.104804.
[PMID] 35644051.
2022
Conducting a representative national randomized control trial of tailored clinical decision support for nurses remotely: Methods and implications.
Contemporary clinical trials.
118
[DOI] 10.1016/j.cct.2022.106712.
[PMID] 35235823.
2022
Development of a Prediction Model for Antibiotic-Resistant Urinary Tract Infections Using Integrated Electronic Health Records from Multiple Clinics in North-Central Florida.
Infectious diseases and therapy.
11(5):1869-1882
[DOI] 10.1007/s40121-022-00677-x.
[PMID] 35908268.
2022
Distributed Quasi-Poisson regression algorithm for modeling multi-site count outcomes in distributed data networks.
Journal of biomedical informatics.
131
[DOI] 10.1016/j.jbi.2022.104097.
[PMID] 35643272.
2022
DLMM as a lossless one-shot algorithm for collaborative multi-site distributed linear mixed models
Nature Communications.
13(1)
[DOI] 10.1038/s41467-022-29160-4.
[PMID] 35354802.
2022
DR-VIDAL – Doubly Robust Variational Information-theoretic Deep Adversarial Learning for Counterfactual Prediction and Treatment Effect Estimation on Real World Data.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2022:485-494
[PMID] 37128454.
2022
Editorial: Measuring and Analysing Social Determinants of Health in the Era of Big Data.
Frontiers in public health.
10
[DOI] 10.3389/fpubh.2022.902942.
[PMID] 35712296.
2022
Effects of brief exposure to misinformation about e-cigarette harms on Twitter on knowledge and perceptions of e-cigarettes.
Digital health.
8
[DOI] 10.1177/20552076221116780.
[PMID] 35935711.
2022
Endocrine adherence in male versus female breast cancer: a seer-medicare review.
Breast cancer research and treatment.
192(3):491-499
[DOI] 10.1007/s10549-022-06536-0.
[PMID] 35142938.
2022
Environmental effects on acute exacerbations of respiratory diseases: A real-world big data study.
The Science of the total environment.
806(Pt 1)
[DOI] 10.1016/j.scitotenv.2021.150352.
[PMID] 34555607.
2022
Establishing a framework for privacy-preserving record linkage among electronic health record and administrative claims databases within PCORnet®, the National Patient-Centered Clinical Research Network.
BMC research notes.
15(1)
[DOI] 10.1186/s13104-022-06243-5.
[PMID] 36316778.
2022
Examining the relationship between metformin dose and cancer survival: A SEER-Medicare analysis.
PloS one.
17(10)
[DOI] 10.1371/journal.pone.0275681.
[PMID] 36260549.
2022
Federated learning for preserving data privacy in collaborative healthcare research.
Digital health.
8
[DOI] 10.1177/20552076221134455.
[PMID] 36325438.
2022
Frailty and risk of mortality in older cancer survivors and adults without a cancer history: Evidence from the National Health and Nutrition Examination Survey, 1999-2014.
Cancer.
128(15):2978-2987
[DOI] 10.1002/cncr.34258.
[PMID] 35608563.
2022
Identification of Social and Racial Disparities in Risk of HIV Infection in Florida using Causal AI Methods.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine.
2022:2934-2939
[DOI] 10.1109/bibm55620.2022.9995662.
[PMID] 36865610.
2022
Identifying Contextual and Spatial Risk Factors for Post-Acute Sequelae of SARS-CoV-2 Infection: An EHR-based Cohort Study from the RECOVER Program.
medRxiv : the preprint server for health sciences.
[DOI] 10.1101/2022.10.13.22281010.
[PMID] 36263067.
2022
Identifying Patients at Risk of Acute Kidney Injury Among Medicare Beneficiaries With Type 2 Diabetes Initiating SGLT2 Inhibitors: A Machine Learning Approach.
Frontiers in pharmacology.
13
[DOI] 10.3389/fphar.2022.834743.
[PMID] 35359843.
2022
Impacts of Eligibility Criteria on Trial Participants’ Age in Alzheimer’s Disease Clinical Trials.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2022:368-376
[PMID] 37128470.
2022
Incidence Trends of New-Onset Diabetes in Children and Adolescents Before and During the COVID-19 Pandemic: Findings From Florida
Diabetes.
71(12):2702-2706
[DOI] 10.2337/db22-0549.
[PMID] 36094294.
2022
Intraindividual Reliability of Opportunistic Computed Tomography–Assessed Adiposity and Skeletal Muscle Among Breast Cancer Patients
JNCI Cancer Spectrum.
6(6)
[DOI] 10.1093/jncics/pkac068.
[PMID] 36222575.
2022
Machine Learning for Identifying Data-Driven Subphenotypes of Incident Post-Acute SARS-CoV-2 Infection Conditions with Large Scale Electronic Health Records: Findings from the RECOVER Initiative.
medRxiv : the preprint server for health sciences.
[DOI] 10.1101/2022.05.21.22275412.
[PMID] 35665007.
2022
Moving from predicting hospital deaths by antibiotic-resistant bloodstream bacteremia toward actionable risk reduction using machine learning on electronic health records.
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.
2022:274-283
[PMID] 35854723.
2022
Multisite learning of high-dimensional heterogeneous data with applications to opioid use disorder study of 15,000 patients across 5 clinical sites.
Scientific reports.
12(1)
[DOI] 10.1038/s41598-022-14029-9.
[PMID] 35773438.
2022
Newer glucose-lowering drugs and risk of dementia: A meta-analysis of cardiovascular outcome trials.
Journal of the American Geriatrics Society.
70(9):2719-2722
[DOI] 10.1111/jgs.17895.
[PMID] 35612586.
2022
ODACH: a one-shot distributed algorithm for Cox model with heterogeneous multi-center data.
Scientific reports.
12(1)
[DOI] 10.1038/s41598-022-09069-0.
[PMID] 35459767.
2022
Personalised Lung Cancer Screening (PLuS) study to assess the importance of coexisting chronic conditions to clinical practice and policy: protocol for a multicentre observational study
BMJ Open.
12(6)
[DOI] 10.1136/bmjopen-2022-064142.
[PMID] 35732383.
2022
PM2.5 Constituents and Onset of Gestational Diabetes Mellitus: Identifying Susceptible Exposure Windows.
Atmospheric environment (Oxford, England : 1994).
291
[DOI] 10.1016/j.atmosenv.2022.119409.
[PMID] 37151750.
2022
Polygenic risk of Alzheimer’s disease in the Faroe Islands.
European journal of neurology.
29(8):2192-2200
[DOI] 10.1111/ene.15351.
[PMID] 35384166.
2022
Predictive Modeling for Suicide-Related Outcomes and Risk Factors among Patients with Pain Conditions: A Systematic Review
Journal of Clinical Medicine.
11(16)
[DOI] 10.3390/jcm11164813.
[PMID] 36013053.
2022
Prevalence of Alzheimer’s and Related Dementia Diseases and Risk Factors Among Transgender Adults, Florida, 2012‒2020.
American journal of public health.
112(5):754-757
[DOI] 10.2105/AJPH.2022.306720.
[PMID] 35324265.
2022
Procedural complications associated with invasive diagnostic procedures after lung cancer screening with low-dose computed tomography.
Lung cancer (Amsterdam, Netherlands).
165:141-144
[DOI] 10.1016/j.lungcan.2021.12.020.
[PMID] 35124410.
2022
Protocol for the development of a reporting guideline for causal and counterfactual prediction models in biomedicine
BMJ Open.
12(6)
[DOI] 10.1136/bmjopen-2021-059715.
[PMID] 35725267.
2022
Simulating Colorectal Cancer Trials Using Real-World Data.
JCO clinical cancer informatics.
6
[DOI] 10.1200/CCI.21.00195.
[PMID] 35839432.
2022
Study protocol for a type III hybrid effectiveness-implementation trial to evaluate scaling interoperable clinical decision support for patient-centered chronic pain management in primary care.
Implementation science : IS.
17(1)
[DOI] 10.1186/s13012-022-01217-4.
[PMID] 35841043.
2022
Syndromic Surveillance Systems for Mass Gatherings: A Scoping Review
International Journal of Environmental Research and Public Health.
19(8)
[DOI] 10.3390/ijerph19084673.
[PMID] 35457541.
2022
Temporal Subtyping of Alzheimer’s Disease Using Medical Conditions Preceding Alzheimer’s Disease Onset in Electronic Health Records.
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.
2022:226-235
[PMID] 35854753.
2022
The Impact of Race–Ethnicity and Diagnosis of Alzheimer’s Disease and Related Dementias on Mammography Use
Cancers.
14(19)
[DOI] 10.3390/cancers14194726.
[PMID] 36230648.
2022
The OneFlorida Data Trust: a centralized, translational research data infrastructure of statewide scope
Journal of the American Medical Informatics Association.
29(4):686-693
[DOI] 10.1093/jamia/ocab221.
[PMID] 34664656.
2022
Unraveling COVID-19: A Large-Scale Characterization of 4.5 Million COVID-19 Cases Using CHARYBDIS.
Clinical epidemiology.
14:369-384
[DOI] 10.2147/CLEP.S323292.
[PMID] 35345821.
2021
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A Study of Social and Behavioral Determinants of Health in Lung Cancer Patients Using Transformers-based Natural Language Processing Models.
AMIA … Annual Symposium proceedings. AMIA Symposium.
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A varied approach to left ventricular assist device follow-up improves cost-effectiveness.
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An efficient and accurate distributed learning algorithm for modeling multi-site zero-inflated count outcomes.
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Assessing the Impact of Imputation on the Interpretations of Prediction Models: A Case Study on Mortality Prediction for Patients with Acute Myocardial Infarction.
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Associations between the chemical composition of PM2.5 and gestational diabetes mellitus
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Bagged random causal networks for interventional queries on observational biomedical datasets.
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Challenges in replicating secondary analysis of electronic health records data with multiple computable phenotypes: A case study on methicillin-resistant Staphylococcus aureus bacteremia infections
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Comparing the downstream costs and healthcare utilization associated with the use of low-dose computed tomography (LDCT) in lung cancer screening in patients with and without alzheimer’s disease and related dementias (ADRD).
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Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets.
AMIA … Annual Symposium proceedings. AMIA Symposium.
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Deep learning models in detection of dietary supplement adverse event signals from Twitter.
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Disparities in Pediatric Patient Portal Activation and Feature Use.
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Emotional Responses and Perceived Relative Harm Mediate the Effect of Exposure to Misinformation about E-Cigarettes on Twitter and Intention to Purchase E-Cigarettes among Adult Smokers.
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Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer’s disease
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Extracting social determinants of health from electronic health records using natural language processing: a systematic review
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Federated Learning for Healthcare Informatics.
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Geographic Variation in Knowledge of Palliative Care Among US Adults: Findings From 2018 Health Information National Trends Survey.
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Geographic variation in palliative care delivery among patients diagnosed with metastatic lung cancer in the USA: Medicare population-based study.
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How the clinical research community responded to the COVID-19 pandemic: an analysis of the COVID-19 clinical studies in ClinicalTrials.gov.
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Optimizing Identification of People Living with HIV from Electronic Medical Records: Computable Phenotype Development and Validation.
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Propensity score synthetic augmentation matching using generative adversarial networks (PSSAM-GAN).
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Racial, Ethnic, and Geographic Disparities in Cardiovascular Health Among Women of Childbearing Age in the United States
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Real-world experience of carfilzomib-associated cardiovascular adverse events: SEER-Medicare data set analysis.
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Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320a
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Smokers’ Likelihood to Engage With Information and Misinformation on Twitter About the Relative Harms of e-Cigarette Use: Results From a Randomized Controlled Trial
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The application of artificial intelligence and data integration in COVID-19 studies: a scoping review
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The association between cognitive impairment and breast and colorectal cancer screening utilization.
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Transformer-Based Named Entity Recognition for Parsing Clinical Trial Eligibility Criteria.
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Unraveling COVID-19: a large-scale characterization of 4.5 million COVID-19 cases using CHARYBDIS.
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Validation of Real-World Data-based Endpoint Measures of Cancer Treatment Outcomes.
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When text simplification is not enough: could a graph-based visualization facilitate consumers’ comprehension of dietary supplement information?
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A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives.
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A Natural Language Processing Tool to Extract Quantitative Smoking Status from Clinical Narratives.
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Ambient Air Pollution and Preeclampsia: Looking Back and Moving Forward.
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An ontology-based documentation of data discovery and integration process in cancer outcomes research
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Are Preregistration and Registered Reports Vulnerable to Hacking?
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Assessing mental health signals among sexual and gender minorities using Twitter data
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Assessing the effect of data integration on predictive ability of cancer survival models
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Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data
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Cardiovascular toxicity in patients treated with immunotherapy for metastatic non-small cell lung cancer: A SEER-medicare study: CVD outcomes with the use of ICI in mNSCLC.
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Causal inference and counterfactual prediction in machine learning for actionable healthcare
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Clinical Trial Generalizability Assessment in the Big Data Era: A Review.
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COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes.
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Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups.
AMIA … Annual Symposium proceedings. AMIA Symposium.
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Explainable artificial intelligence models using real-world electronic health record data: a systematic scoping review.
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Exploring Eating Disorder Topics on Twitter: Machine Learning Approach
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Exploring the semantics in mental health research.
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Extracting Family History of Patients From Clinical Narratives: Exploring an End-to-End Solution With Deep Learning Models
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How the clinical research community responded to the COVID-19 pandemic: An analysis of the COVID-19 clinical studies in ClinicalTrials.gov.
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Identifying Clinical Risk Factors for Opioid Use Disorder using a Distributed Algorithm to Combine Real-World Data from a Large Clinical Data Research Network.
AMIA … Annual Symposium proceedings. AMIA Symposium.
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Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting.
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iDISK: the integrated DIetary Supplements Knowledge base.
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International Classification of Diseases, Tenth Revision, Clinical Modification social determinants of health codes are poorly used in electronic health records
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Learning from local to global: An efficient distributed algorithm for modeling time-to-event data.
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Leverage Real-world Longitudinal Data in Large Clinical Research Networks for Alzheimer’s Disease and Related Dementia (ADRD).
AMIA … Annual Symposium proceedings. AMIA Symposium.
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Measurement of Semantic Textual Similarity in Clinical Texts: Comparison of Transformer-Based Models
JMIR Medical Informatics.
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MicroRNA predicts cognitive performance in healthy older adults.
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Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States.
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Mining Twitter to Assess the Determinants of Health Behavior towards Palliative Care in the United States.
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Nursing Care for Hospitalized Older Adults With and Without Cognitive Impairment.
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Oncologists’ Reluctance to Use the Terms Hope and Cure: A Bibliometric Analysis of Articles From Two High-Impact Oncology Journals.
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Optimizing identification of resistant hypertension: Computable phenotype development and validation.
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Outcomes of primary endocrine therapy in elderly women with stage I-III breast cancer: a SEER database analysis.
Breast cancer research and treatment.
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Planning for patient-reported outcome implementation: Development of decision tools and practical experience across four clinics.
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Prodromal clinical, demographic, and socio-ecological correlates of asthma in adults: a 10-year statewide big data multi-domain analysis.
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Provider-Patient Discussions About Smoking and the Impact of Lung Cancer Screening Guidelines: NHIS 2011-2015.
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Re: A Call for Deep-learning Healthcare.
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Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019).
BMC medical informatics and decision making.
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Statin Use for Atherosclerotic Cardiovascular Disease Prevention Among Sexual Minority Adults
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Statin Use for Atherosclerotic Cardiovascular Disease Prevention Among Sexual Minority Adults
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The rapid growth of intelligent systems in health and health care.
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Timing, Costs, and Survival Outcome of Specialty Palliative Care in Medicare Beneficiaries With Metastatic Non–Small-Cell Lung Cancer
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Use of Deep Learning to Analyze Social Media Discussions About the Human Papillomavirus Vaccine.
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User-centered design of a web-based crowdsourcing-integrated semantic text annotation tool for building a mental health knowledge base
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Using Real-World Data to Rationalize Clinical Trials Eligibility Criteria Design: A Case Study of Alzheimer’s Disease Trials.
AMIA … Annual Symposium proceedings. AMIA Symposium.
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2019
A Study of Deep Learning Methods for De-identification of Clinical Notes at Cross Institute Settings.
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A study of deep learning methods for de-identification of clinical notes in cross-institute settings.
BMC medical informatics and decision making.
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ALOHA: developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design.
BMC medical informatics and decision making.
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Analysis of Twitter to Identify Topics Related to Eating Disorder Symptoms.
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Analyzing Social Media Data to Understand Consumer Information Needs on Dietary Supplements.
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Assessing the Validity of a a priori Patient-Trial Generalizability Score using Real-world Data from a Large Clinical Data Research Network: A Colorectal Cancer Clinical Trial Case Study.
AMIA … Annual Symposium proceedings. AMIA Symposium.
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Building Computational Models to Predict One-Year Mortality in ICU Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome.
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Classification Tree Analysis of Factors Associated with Oral Cancer Exam.
American journal of health behavior.
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Clinical correlates of workplace injury occurrence and recurrence in adults.
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Clustering and topic modeling over tweets: A comparison over a health dataset.
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Diabetes Technology Society Report on the FDA Digital Health Software Precertification Program Meeting.
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Efficacy and Effectiveness of Mobile Health Technologies for Facilitating Physical Activity in Adolescents: Scoping Review
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Enhancing Prediction Models for One-Year Mortality in Patients with Acute Myocardial Infarction and Post Myocardial Infarction Syndrome.
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Exploring Lung Cancer Screening Discussions on Twitter.
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Facilitation or Hindrance: Physicians’ Perception on Best Practice Alerts (BPA) Usage in an Electronic Health Record System.
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Implementing a hash-based privacy-preserving record linkage tool in the OneFlorida clinical research network.
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Injury Burden in the United States: Accurate, Reliable, and Timely Surveillance Using Electronic Health Care Data.
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Knowledge of Palliative Care Among American Adults: 2018 Health Information National Trends Survey
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Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media
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Low Rates of Patient-Reported Physician-Patient Discussion about Lung Cancer Screening among Current Smokers: Data from Health Information National Trends Survey.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology.
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MADEx: A System for Detecting Medications, Adverse Drug Events, and Their Relations from Clinical Notes.
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PCSK9 Inhibitor Use in the Real World: Data From the National Patient-Centered Research Network.
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Raiders of the lost HARK: a reproducible inference framework for big data science
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Risk of health morbidity for the uninsured: 10-year evidence from a large hospital center in Boston, Massachusetts.
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Secondary use of standardized nursing care data for advancing nursing science and practice: a systematic review.
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Selected articles from the Third International Workshop on Semantics-Powered Data Analytics (SEPDA 2018).
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STAT: A Web-based Semantic Text Annotation Tool to Assist Building Mental Health Knowledge Base.
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2019
Understanding Perceptions and Attitudes in Breast Cancer Discussions on Twitter.
Studies in health technology and informatics.
264:1293-1297
[DOI] 10.3233/SHTI190435.
[PMID] 31438134.
2019
Use of Social Media in Health Communication: Findings From the Health Information National Trends Survey 2013, 2014, and 2017.
Cancer control : journal of the Moffitt Cancer Center.
26(1)
[DOI] 10.1177/1073274819841442.
[PMID] 30995864.
2019
Utilization pattern and service settings of palliative care for patients with metastatic non-small cell lung cancer.
Cancer.
125(24):4481-4489
[DOI] 10.1002/cncr.32478.
[PMID] 31449674.
2018
A 3-minute test of cardiorespiratory fitness for use in primary care clinics.
PloS one.
13(7)
[DOI] 10.1371/journal.pone.0201598.
[PMID] 30059539.
2018
A novel framework for biomedical entity sense induction.
Journal of biomedical informatics.
84:31-41
[DOI] 10.1016/j.jbi.2018.06.007.
[PMID] 29935347.
2018
An integrative approach to investigate the association among high-sensitive C-reactive protein, body fat mass distribution, and other cardiometabolic risk factors in young healthy women
Methods.
145:60-66
[DOI] 10.1016/j.ymeth.2018.04.016.
[PMID] 29702223.
2018
An ontology-guided semantic data integration framework to support integrative data analysis of cancer survival.
BMC medical informatics and decision making.
18(Suppl 2)
[DOI] 10.1186/s12911-018-0636-4.
[PMID] 30066664.
2018
Assessing the practice of biomedical ontology evaluation: Gaps and opportunities
Journal of Biomedical Informatics.
80:1-13
[DOI] 10.1016/j.jbi.2018.02.010.
[PMID] 29462669.
2018
Big data hurdles in precision medicine and precision public health.
BMC medical informatics and decision making.
18(1)
[DOI] 10.1186/s12911-018-0719-2.
[PMID] 30594159.
2018
Combine Factual Medical Knowledge and Distributed Word Representation to Improve Clinical Named Entity Recognition.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2018:1110-1117
[PMID] 30815153.
2018
Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2018:1601-1610
[PMID] 30815206.
2018
Correction to: Evaluating semantic relations in neural word embeddings with biomedical and general domain knowledge bases.
BMC medical informatics and decision making.
18(1)
[DOI] 10.1186/s12911-018-0655-1.
[PMID] 30134877.
2018
Detecting Signals of Associations between Dietary Supplement Use and Mental Disorders from Twitter.
2018 IEEE International Conference on Healthcare Informatics Workshops : proceedings : 4-7 June 2018, New York, NY. International Conference on Healthcare Informatics (6th : 2018 : New York, N.Y.). Workshops.
2018:53-54
[DOI] 10.1109/ICHI-W.2018.00016.
[PMID] 31452863.
2018
Development of a personalized diagnostic model for kidney stone disease tailored to acute care by integrating large clinical, demographics and laboratory data: the diagnostic acute care algorithm – kidney stones (DACA-KS).
BMC medical informatics and decision making.
18(1)
[DOI] 10.1186/s12911-018-0652-4.
[PMID] 30119627.
2018
Evaluating semantic relations in neural word embeddings with biomedical and general domain knowledge bases.
BMC medical informatics and decision making.
18(Suppl 2)
[DOI] 10.1186/s12911-018-0630-x.
[PMID] 30066651.
2018
Evaluating the reliability and validity of SF-8 with a large representative sample of urban Chinese.
Health and quality of life outcomes.
16(1)
[DOI] 10.1186/s12955-018-0880-4.
[PMID] 29615060.
2018
Evidence-based tobacco treatment utilization among dual users of cigarettes and E-cigarettes
Preventive Medicine.
114:193-199
[DOI] 10.1016/j.ypmed.2018.07.010.
2018
Introduction: selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017).
BMC medical informatics and decision making.
18(Suppl 2)
[DOI] 10.1186/s12911-018-0624-8.
[PMID] 30066636.
2018
Learning bundled care opportunities from electronic medical records
Journal of Biomedical Informatics.
77:1-10
[DOI] 10.1016/j.jbi.2017.11.014.
[PMID] 29174994.
2018
OC-2-KB: integrating crowdsourcing into an obesity and cancer knowledge base curation system.
BMC medical informatics and decision making.
18(Suppl 2)
[DOI] 10.1186/s12911-018-0635-5.
[PMID] 30066655.
2018
Prevalence of Multiple Chronic Conditions Among Older Adults in Florida and the United States: Comparative Analysis of the OneFlorida Data Trust and National Inpatient Sample
Journal of Medical Internet Research.
20(4)
[DOI] 10.2196/jmir.8961.
[PMID] 29650502.
2018
Prototyping an Interactive Visualization of Dietary Supplement Knowledge Graph.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine.
2018:1649-1652
[DOI] 10.1109/BIBM.2018.8621340.
[PMID] 31667004.
2018
Rural-urban and racial-ethnic differences in awareness of direct-to-consumer genetic testing.
BMC public health.
18(1)
[DOI] 10.1186/s12889-018-5190-6.
[PMID] 29471813.
2018
Spatial context-aware user mention behavior modeling for mentionee recommendation.
Neural networks : the official journal of the International Neural Network Society.
106:152-167
[DOI] 10.1016/j.neunet.2018.07.007.
[PMID] 30075352.
2017
Assessing the Quality of Mobile Exercise Apps Based on the American College of Sports Medicine Guidelines: A Reliable and Valid Scoring Instrument
Journal of Medical Internet Research.
19(3)
[DOI] 10.2196/jmir.6976.
[PMID] 28270378.
2017
Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS Concepts.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine.
2017:1262-1269
[DOI] 10.1109/BIBM.2017.8217840.
[PMID] 29375930.
2017
Comparing and Contrasting A Priori and A Posteriori Generalizability Assessment of Clinical Trials on Type 2 Diabetes Mellitus.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2017:849-858
[PMID] 29854151.
2017
Data Integration through Ontology-Based Data Access to Support Integrative Data Analysis: A Case Study of Cancer Survival.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine.
2017:1300-1303
[DOI] 10.1109/BIBM.2017.8217849.
[PMID] 29707415.
2017
Enriching consumer health vocabulary through mining a social Q&A site: A similarity-based approach
Journal of Biomedical Informatics.
69:75-85
[DOI] 10.1016/j.jbi.2017.03.016.
[PMID] 28359728.
2017
Explore Care Pathways of Colorectal Cancer Patients with Social Network Analysis.
Studies in health technology and informatics.
245
[PMID] 29295355.
2017
Exploring the Association Between Self-Reported Asthma Impact and Fitbit-Derived Sleep Quality and Physical Activity Measures in Adolescents
JMIR mHealth and uHealth.
5(7)
[DOI] 10.2196/mhealth.7346.
[PMID] 28743679.
2017
Mobile Device Accuracy for Step Counting Across Age Groups
JMIR mHealth and uHealth.
5(6)
[DOI] 10.2196/mhealth.7870.
[PMID] 28659255.
2017
OC-2-KB: A software pipeline to build an evidence-based obesity and cancer knowledge base.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine.
2017:1284-1287
[DOI] 10.1109/BIBM.2017.8217845.
[PMID] 29629236.
2017
Risk prediction model for in-hospital mortality in women with ST-elevation myocardial infarction: A machine learning approach
Heart & Lung.
46(6):405-411
[DOI] 10.1016/j.hrtlng.2017.09.003.
2017
Semantics-Powered Healthcare Engineering and Data Analytics.
Journal of healthcare engineering.
2017
[DOI] 10.1155/2017/7983473.
[PMID] 29214005.
2017
Smartphone-based vs paper-based asthma action plans for adolescents.
Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology.
118(3):298-303
[DOI] 10.1016/j.anai.2016.11.028.
[PMID] 28111110.
2017
The Building Blocks of Interoperability. A Multisite Analysis of Patient Demographic Attributes Available for Matching.
Applied clinical informatics.
8(2):322-336
[DOI] 10.4338/ACI-2016-11-RA-0196.
[PMID] 28378025.
2017
Towards a privacy preserving cohort discovery framework for clinical research networks.
Journal of biomedical informatics.
66:42-51
[DOI] 10.1016/j.jbi.2016.12.008.
[PMID] 28007583.
2017
Using Social Media Data to Understand the Impact of Promotional Information on Laypeople’s Discussions: A Case Study of Lynch Syndrome
Journal of Medical Internet Research.
19(12)
[DOI] 10.2196/jmir.9266.
[PMID] 29237586.
2016
Accuracy of weight loss information in Spanish search engine results on the internet.
Obesity (Silver Spring, Md.).
24(11):2422-2434
[DOI] 10.1002/oby.21646.
[PMID] 27653438.
2016
An accurate and precise representation of drug ingredients.
Journal of biomedical semantics.
7
[DOI] 10.1186/s13326-016-0048-2.
[PMID] 27096073.
2016
Analysis of Temporal Constraints in Qualitative Eligibility Criteria of Cancer Clinical Studies.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine.
2016:717-722
[DOI] 10.1109/BIBM.2016.7822607.
[PMID] 29263940.
2016
Assessing the Comorbidity Gap between Clinical Studies and Prevalence in Elderly Patient Populations.
… IEEE-EMBS International Conference on Biomedical and Health Informatics. IEEE-EMBS International Conference on Biomedical and Health Informatics.
2016:136-139
[PMID] 27738664.
2016
Consumers’ Use of UMLS Concepts on Social Media: Diabetes-Related Textual Data Analysis in Blog and Social Q&A Sites
JMIR Medical Informatics.
4(4)
[DOI] 10.2196/medinform.5748.
[PMID] 27884812.
2016
DiaFit: The Development of a Smart App for Patients with Type 2 Diabetes and Obesity
JMIR Diabetes.
1(2)
[DOI] 10.2196/diabetes.6662.
[PMID] 29388609.
2016
Examining Healthcare Utilization Patterns of Elderly Middle-Aged Adults in the United States.
Proceedings of the … International Florida AI Research Society Conference. Florida AI Research Symposium.
2016:361-366
[PMID] 27430035.
2016
Mining Twitter to Assess the Public Perception of the “Internet of Things”
PLOS ONE.
11(7)
[DOI] 10.1371/journal.pone.0158450.
[PMID] 27391760.
2016
SegAuth: A Segment-based Approach to Behavioral Biometric Authentication.
… IEEE Conference on Communications and Network Security. IEEE Conference on Communications and Network Security.
2016:1-9
[DOI] 10.1109/CNS.2016.7860464.
[PMID] 28573214.
2016
Towards an Obesity-Cancer Knowledge Base: Biomedical Entity Identification and Relation Detection.
Proceedings. IEEE International Conference on Bioinformatics and Biomedicine.
2016:1081-1088
[DOI] 10.1109/BIBM.2016.7822672.
[PMID] 28503356.
2016
Twitter Analysis: Studying US Weekly Trends in Work Stress and Emotion
Applied Psychology-An International Review-Psychologie Appliquee-Revue Internationale.
65(2, SI):355-378
[DOI] 10.1111/apps.12065.
2016
Visual programming for next-generation sequencing data analytics.
BioData mining.
9
[DOI] 10.1186/s13040-016-0095-3.
[PMID] 27127540.
2015
A deconvolution-based approach to identifying large-scale effective connectivity.
Magnetic resonance imaging.
33(10):1290-1298
[DOI] 10.1016/j.mri.2015.07.015.
[PMID] 26248273.
2015
Improving the precision of fMRI BOLD signal deconvolution with implications for connectivity analysis
Magnetic Resonance Imaging.
33(10):1314-1323
[DOI] 10.1016/j.mri.2015.07.007.
[PMID] 26226647.
2015
Low Quality of Free Coaching Apps With Respect to the American College of Sports Medicine Guidelines: A Review of Current Mobile Apps
JMIR mHealth and uHealth.
3(3)
[DOI] 10.2196/mhealth.4669.
[PMID] 26209109.
2015
Mining Twitter as a First Step toward Assessing the Adequacy of Gender Identification Terms on Intake Forms.
AMIA … Annual Symposium proceedings. AMIA Symposium.
2015:611-20
[PMID] 26958196.
2014
Automated Tools for Clinical Research Data Quality Control using NCI Common Data Elements.
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.
2014:60-9
[PMID] 25717402.
2014
CLARA: an integrated clinical research administration system.
Journal of the American Medical Informatics Association : JAMIA.
21(e2):e369-73
[DOI] 10.1136/amiajnl-2013-002616.
[PMID] 24778201.
2014
CollaborationViz: interactive visual exploration of biomedical research collaboration networks.
PloS one.
9(11)
[DOI] 10.1371/journal.pone.0111928.
[PMID] 25405477.
2014
Social network analysis of biomedical research collaboration networks in a CTSA institution.
Journal of biomedical informatics.
52:130-40
[DOI] 10.1016/j.jbi.2014.01.015.
[PMID] 24560679.
2014
USign–a security enhanced electronic consent model.
Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference.
2014:4487-90
[DOI] 10.1109/EMBC.2014.6944620.
[PMID] 25570988.
2013
A probabilistic model of functional brain connectivity network for discovering novel biomarkers.
AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.
2013:21-5
[PMID] 24303289.
2012
Towards Large-scale Twitter Mining for Drug-related Adverse Events.
SHB'12 : proceedings of the 2012 ACM International Workshop on Smart Health and Wellbeing : October 29, 2012, Maui, Hawaii, USA. International Workshop on Smart Health and Wellbeing (2012 : Maui, Hawaii).
2012:25-32
[DOI] 10.1145/2389707.2389713.
[PMID] 28967001.
2008
[Epidemiological survey on malaria situation in Motuo County of Tibet, China].
Zhongguo ji sheng chong xue yu ji sheng chong bing za zhi = Chinese journal of parasitology & parasitic diseases.
26(5):343-8
[PMID] 19157296.
2006
Exploring a possible way to synthesize novel better antioxidants based on vitamin E: a DFT study.
Bioorganic & medicinal chemistry letters.
16(22):5874-7
[PMID] 16942877.
2006
The ortho hydroxy-amino group: another choice for synthesizing novel antioxidants.
Bioorganic & medicinal chemistry letters.
16(13):3582-5
[PMID] 16621555.
2003
[Experimental study of vasoligation in the treatment and prevention of benign prostatic hyperplasia].
Zhonghua nan ke xue = National journal of andrology.
9(1):20-3
[PMID] 12680325.
An Efficient and Accurate Distributed Learning Algorithm for Modeling Multi-Site Zero- Inflated Count Outcomes
.
[DOI] 10.1101/2020.12.17.20248194.
Assessing the Impact of Imputation on the Interpretations of Prediction Models: A Case Study on Mortality Prediction for Patients with Acute Myocardial Infarction
.
[DOI] 10.1101/2020.06.06.20124347.
Developing and Validating a Computable Phenotype for the Identification of Transgender and Gender Nonconforming Individuals and Subgroups
.
[DOI] 10.1101/2020.08.04.20168161.
Development of a Web-Based Crowdsourcing-Integrated Semantic Text Annotation Tool to Assist in Building a Mental Health Knowledge Base: User-Centered Design Approach (Preprint)
.
[DOI] 10.2196/preprints.18293.
Efficacy and Effectiveness of Mobile Health Technologies for Facilitating Physical Activity in Adolescents: Scoping Review (Preprint)
.
[DOI] 10.2196/preprints.11847.
Exploring Eating Disorder Topics on Twitter: Machine Learning Approach (Preprint)
.
[DOI] 10.2196/preprints.18273.
Exploring the Feasibility of Using Real-World Data from a Large Clinical Data Research Network to Simulate Clinical Trials of Alzheimer’s Disease
.
[DOI] 10.1101/2020.08.16.20167577.
Exploring the Feasibility of Using Real-World Data from a Large Clinical Data Research Network to Simulate Clinical Trials of Alzheimer’s Disease
.
[DOI] 10.1101/2020.06.03.20121491.
Extracting Family History of Patients From Clinical Narratives: Exploring an End-to-End Solution With Deep Learning Models (Preprint)
.
[DOI] 10.2196/preprints.22982.
Leverage Real-world Longitudinal Data in Large Clinical Research Networks for Alzheimer’s Disease and Related Dementia (ADRD)
.
[DOI] 10.1101/2020.08.03.20167619.
Measurement of Semantic Textual Similarity in Clinical Texts: Comparison of Transformer-Based Models (Preprint)
.
[DOI] 10.2196/preprints.19735.
Prevalence of Multiple Chronic Conditions Among Older Adults in Florida and the United States: Comparative Analysis of the OneFlorida Data Trust and National Inpatient Sample
.
[DOI] 10.2196/preprints.8961.
Prevalence of Multiple Chronic Conditions Among Older Adults in Florida and the United States: Comparative Analysis of the OneFlorida Data Trust and National Inpatient Sample
.
[DOI] 10.2196/preprints.8961.a.
Using Real-World Data to Rationalize Clinical Trials Eligibility Criteria Design: A Case Study of Alzheimer’s Disease Trials
.
[DOI] 10.1101/2020.08.02.20166629.
Using Social Media Data to Understand the Impact of Promotional Information on Laypeople�s Discussions: A Case Study of Lynch Syndrome (Preprint)
.
[DOI] 10.2196/preprints.9266.
Grants
Sep 2023
ACTIVE
Development of a provider centered intervention for Non-Traumatic Dental Condition management in the Emergency Department
Role: Other
Funding: NATL INST OF HLTH NIDCR
Sep 2023
ACTIVE
Identifying pediatric asthma subtypes using novel privacy-preserving federated machine learning methods
Role: Co-Investigator
Funding: NATL INST OF HLTH NHLBI
Sep 2023
ACTIVE
An end-to-end informatics framework to study Multiple Chronic Conditions (MCC)s impact on Alzheimers disease using harmonized electronic health records
Role: Principal Investigator
Funding: UNIV OF TEXAS HLTH SCI CTR AT HOUSTON
via NATL INST OF HLTH NIA
Sep 2023
ACTIVE
Newer Glucose-lowering drugs and risk of Alzheimer's disease and related dementia
Role: Other
Funding: PHARMA RES AND MANUFACTURERS OF AMERICA
Sep 2023
ACTIVE
Newer Glucose-Lowering Drugs and Risk of Parkinsons Disease in people with type 2 diabetes
Role: Other
Funding: AMER FOU FOR PHARM EDU
Aug 2023
ACTIVE
Harnessing EHR to develop a Florida-based Coalition on Cancer Care Inequities among PHIV (Social Determinants of Health and Quality of Cancer Care in HIV-associated Cancers)
Role: Co-Project Director/Principal Investigator
Funding: H LEE MOFFITT CANCER CTR & RES INST
via NATL INST OF HLTH NCI
Jul 2023
ACTIVE
Advancing Precision Lung Cancer Surveillance and Outcomes in Diverse Populations (PLuS2)
Role: Principal Investigator
Funding: NATL INST OF HLTH NCI
Jul 2023
ACTIVE
Capacity Building Projects to Support UF Health's Participation in the Health Systems Implementation Initiative
Role: Co-Investigator
Funding: PATIENT-CENTERED OUTCOMES RES INST
Jul 2023
ACTIVE
Together: Transforming and Translating Discovery to Improve Health
Role: Faculty
Funding: NATL INST OF HLTH NCATS
Jul 2023
ACTIVE
Prader Willi Syndrome Natural History Studies
Role: Principal Investigator
Funding: MELAX TECHNOLOGIES
Jun 2023
ACTIVE
Harmonizing and Integrating Nursing Data into Multidisciplinary Datasets to Evaluate Hospital Care and Readmissions of Older Adults with Alzheimers Disease and Alzheimers Disease-Related Dementias
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
May 2023
ACTIVE
AI-ADRD: Accelerating interventions of AD/ADRD via Machine learning methods
Role: Principal Investigator
Funding: UNIV OF PENNSYLVANIA
via NATL INST OF HLTH NIA
Apr 2023
ACTIVE
Artificial Intelligence and Counterfactually Actionable Responses to End HIV (AICARE-HIV)
Role: Principal Investigator
Funding: NATL INST OF HLTH NIAID
Apr 2023
ACTIVE
PANDA-MSD: Predictive Analytics via Networked Distributed Algorithms for Multi-System Diseases
Role: Principal Investigator
Funding: UNIV OF PENNSYLVANIA
via VASCULITIS FOUNDATION
Mar 2023
ACTIVE
Utilizing Data from the Electronic Health Record to Understand the Progression Pathway of Alzheimers Disease and Related Dementias
Role: Principal Investigator
Funding: FL DEPT OF HLTH ED ETHEL MOORE ALZHEIMER
Feb 2023
ACTIVE
Disparities of Alzheimer's disease progression in sexual and gender minorities
Role: Principal Investigator
Funding: NATL INST OF HLTH NIA
Feb 2023
ACTIVE
Eligibility criteria design for Alzheimers trials with real-world data and explainable AI
Role: Principal Investigator
Funding: WEILL MED COLLEGE OF CORNELL UNIV
via NATL INST OF HLTH NIA
Feb 2023
– Sep 2023
VA IPA – Geospatial analysis of racial and rural-nonrural disparities in adherence to follow-up lung cancer screening recommendations in Veterans
Role: Principal Investigator
Funding: US DEPT OF VET AFF GAINESVILLE MED CTR
Jan 2023
ACTIVE
Twitter networks and dynamics of discussions related to pesticides
Role: Co-Project Director/Principal Investigator
Funding: SYNGENTA CROP PROTECTION LLC
Jan 2023
– Jul 2023
Supplement: The External Exposome and COVID-19 Severity among Individuals with Alzheimers Disease and Related Dementias
Role: Principal Investigator
Funding: BRIGHAM AND WOMENS HOSPITAL
via NATL INST OF HLTH NIEHS
Dec 2022
ACTIVE
Assessing Barriers and Facilitators for Participating Structured Lifestyle Intervention
Role: Co-Investigator
Funding: EMORY UNIV
via CTRS FOR DISEASE CONTROL AND PREVENTION
Sep 2022
ACTIVE
Workshop on AI Governance in For-profit and Not-for-profit Organizations
Role: Co-Project Director/Principal Investigator
Funding: NATL SCIENCE FOU
Sep 2022
– Dec 2022
Assessing Barriers and Facilitators for Participating Structured Lifestyle Intervention and Its Real-world Effectiveness and Cost-effectiveness among US Veterans
Role: Co-Investigator
Funding: CTRS FOR DISEASE CONTROL AND PREVENTION
Aug 2022
ACTIVE
PANDA-MSD: Predictive Analytics via Networked Distributed Algorithms for Multi-System Diseases
Role: Principal Investigator
Funding: UNIV OF PENNSYLVANIA
via NATL INST OF HLTH NCATS
Jul 2022
ACTIVE
Building Equity Improvement into Quality Improvement in the use of New Glucose-lowering Drugs (GLDs) through Individualized Drug Value Assessment in People with Diabetes
Role: Co-Investigator
Funding: NATL INST OF HLTH NIDDK
Jul 2022
– Aug 2023
Addressing Disparities of Care in Lung Cancer Patients
Role: Principal Investigator
Funding: GENENTECH INC
Jul 2022
ACTIVE
Social Determinants Underlying Disparities in Heart Failure Treatment and Outcomes
Role: Co-Investigator
Funding: PHARMA RES AND MANUFACTURERS OF AMERICA
Jul 2022
– Jun 2023
Risk of adverse cardiovascular events in breast cancer patients receiving systemic adjuvant therapy: impact of comorbidity burden
Role: Co-Investigator
Funding: FL BREAST CANCER FOU
Mar 2022
ACTIVE
Using Machine Learning with Real-World Data to Identify Autism Risk in Children
Role: Co-Investigator
Funding: UNIV OF SOUTHERN CALIFORNIA
via NATL INST OF HLTH NIMH
Mar 2022
ACTIVE
Computational Drug Repurposing for AD/ADRD with Integrative Analysis of Real-World Data and Biomedical Knowledge
Role: Principal Investigator
Funding: WEILL MED COLLEGE OF CORNELL UNIV
via NATL INST OF HLTH NIA
Jan 2022
ACTIVE
OneFlorida+ Phase 3 Clinical Research Network
Role: Co-Investigator
Funding: PATIENT-CENTERED OUTCOMES RES INST
Dec 2021
– Jul 2023
The External Exposome and COVID-19 Severity and Mortality
Role: Principal Investigator
Funding: BRIGHAM AND WOMENS HOSPITAL
via NATL INST OF HLTH NIEHS
Oct 2021
– May 2023
RESEARCHING COVID TO ENHANCE RECOVERY (RECOVER) INITIATIVE
Role: Principal Investigator
Funding: WEILL MED COLLEGE OF CORNELL UNIV
via NATL INST OF HLTH NHLBI
Oct 2021
– Sep 2022
Identification and mitigation of structured electronic health record source data mapping issues (DI3)
Role: Principal Investigator
Funding: HARVARD PILGRIM HEALTHCARE
via US FOOD AND DRUG ADMN
Sep 2021
ACTIVE
Computable social factor phenotyping using EHR and HIE data
Role: Co-Investigator
Funding: INDIANA UNIV
via AGENCY FOR HEALTHCARE RES AND QUALITY
Sep 2021
ACTIVE
Scaling Interoperable Clinical Decision Support for Patient-Centered Chronic Pain Care
Role: Co-Investigator
Funding: AGENCY FOR HEALTHCARE RES AND QUALITY
Jul 2021
ACTIVE
Developing and Evaluating a Machine-Learning Opioid Prediction & Risk-Stratification E-Platform (DEMONSTRATE)
Role: Co-Investigator
Funding: NATL INST OF HLTH NIDA
Jul 2021
ACTIVE
Comparative Effectiveness Research for Neuroendocrine Tumors (CER-NET)
Role: Other
Funding: UNIV OF IOWA
via PATIENT-CENTERED OUTCOMES RES INST
Jun 2021
ACTIVE
Personalized screening for lung cancer: the importance of co-existing chronic conditions to clinical practice and policy
Role: Co-Investigator
Funding: NATL INST OF HLTH NCI
May 2021
– Apr 2023
Harmonizing and Integrating Nursing Data into Multidisciplinary Datasets to Evaluate Hospital Care and Readmissions of Older Adults with Alzheimers Disease and Alzheimers Disease-Related Dementias
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
May 2021
– Apr 2022
Evaluating Public Perception of Pesticides Using Social Media Data Analysis
Role: Co-Investigator
Funding: SYNGENTA CROP PROTECTION LLC
Apr 2021
ACTIVE
Advancing Interdisciplinary Science of Aging through Identification of Iatrogenic Complications: The UF EHR Clinical Data Infrastructure for Enhanced Patient Safety among the Elderly (UF-ECLIPSE)
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
Apr 2021
ACTIVE
Optimizing the Population Representativeness of Older Adults in Cancer Trials
Role: Principal Investigator
Funding: NATL INST OF HLTH NCI
Apr 2021
ACTIVE
Advancing Drug Repositioning for Alzheimers Disease using Real-world Data
Role: Principal Investigator
Funding: NATL INST OF HLTH NIA
Dec 2020
– Nov 2022
Novel, High-Impact Studies Evaluating Health System and Healthcare Professional Responsiveness to COVID-19
Role: Co-Investigator
Funding: AGENCY FOR HEALTHCARE RES AND QUALITY
Sep 2020
ACTIVE
Using Real-world Data to Assess the Burden of Diabetes in Children and Adolescents in Florida
Role: Principal Investigator
Funding: CTRS FOR DISEASE CONTROL AND PREVENTION
Sep 2020
ACTIVE
Linking VA and non-VA data to study the risk of suicide in chronic pain patients
Role: Principal Investigator
Funding: WEILL MED COLLEGE OF CORNELL UNIV
via NATL INST OF HLTH NIMH
Aug 2020
– Sep 2021
The External Exposome and COVID-19 Severity
Role: Principal Investigator
Funding: NATL INST OF HLTH NIEHS
Aug 2020
ACTIVE
Optimizing the Population Representativeness of Older Adults in Alzheimer's Disease and Related Dementia Clinical Trials
Role: Principal Investigator
Funding: NATL INST OF HLTH NIA
Aug 2020
ACTIVE
Using Electronic Health Records from a Large Clinical Data Research Network to Understand Cancer Burden and Cancer Risks Among Transgender and Gender Nonconforming (TGNC) Individuals
Role: Principal Investigator
Funding: NATL INST OF HLTH NCI
Jul 2020
– Jun 2023
Sunshine Portal Year 2
Role: Co-Investigator
Funding: FL DIV OF EARLY LEARNING
via ADMN FOR CHILDREN AND FAMILIES
Jun 2020
ACTIVE
1Florida Alzheimers Disease Research Center
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
Apr 2020
– Sep 2020
IBM Task Order – Development of New and Innovative Methods for Automated Reporting for CBER-Regulated Biological Products – FDA Task Order 2, Order # 75F40119F19002
Role: Co-Investigator
Funding: IBM CORP
via US FOOD AND DRUG ADMN
Jan 2020
– Aug 2020
The provision of research and evaluation to determine the short and long-term human health impacts from harmful algal blooms (HABs)
Role: Co-Investigator
Funding: FL DEPT OF HLTH
Jan 2020
ACTIVE
Extracting information from clinical narratives for Clinical Outcomes Research
Role: Co-Project Director/Principal Investigator
Funding: PATIENT-CENTERED OUTCOMES RES INST
Jan 2020
ACTIVE
The benefits and harms of lung cancer screening in Florida
Role: Principal Investigator
Funding: NATL INST OF HLTH NCI
Jan 2020
– Mar 2020
Data Science in Health Informatics Workshop with Deep Learning Winter 2020
Role: Co-Investigator
Funding: *NORTHEASTERN UNIVERSITY OF CHINA
Dec 2019
ACTIVE
Artificial Intelligence-aided Personalization on Dual Antiplatelet Therapy for Patients Underwent Coronary Stent Implantation Using Large-scale Electronic Health Records
Role: Principal Investigator
Funding: UNIV OF TEXAS HLTH SCI CTR AT HOUSTON
via AMER HEART ASSOCIATION
Oct 2019
– Mar 2023
Clinically-Efficient Strategies to Address Tobacco Smoke Exposure in Pediatric Practice
Role: Co-Investigator
Funding: FL DEPT OF HLTH BIOMED RES PGM/J&E KING
Sep 2019
– Jul 2023
Tailored Clinical Decision Support Formats Designed to Improve Palliative Care for Cancer and Chronically Ill Patients: A Pre-Clinical Test
Role: Co-Investigator
Funding: NATL INST OF HLTH NINR
Jul 2019
ACTIVE
Text and Talk: A multi-level intervention to increase provider HPV vaccine recommendation effectiveness
Role: Co-Investigator
Funding: NATL INST OF HLTH NCI
Jul 2019
– Jun 2022
UF Health Cancer Center Pilot Projects funded by UF Foundation Allocated Funds
Role: Project Manager
Funding: UF FOUNDATION
Jul 2019
– Sep 2019
Data Science in Health Informatics Workshop Summer 2019
Role: Principal Investigator
Funding: *NORTHEASTERN UNIVERSITY OF CHINA
Apr 2019
– Mar 2021
Advancing Interdisciplinary Science of Aging through Identification of Iatrogenic Complications: The UF EHR Clinical Data Infrastructure for Enhanced Patient Safety among the Elderly (UF-ECLIPSE)
Role: Co-Investigator
Funding: NATL INST OF HLTH NIA
Feb 2019
– Feb 2021
Utilizing Data from the Electronic Medical Record to Predict Alzheimers and Dementia Risk
Role: Co-Investigator
Funding: FL DEPT OF HLTH ED ETHEL MOORE ALZHEIMER
Jan 2019
– Nov 2022
Systematic Analysis of Clinical Study Generalizability Assessment Methods with Informatics
Role: Principal Investigator
Funding: FL STATE UNIV
via NATL INST OF HLTH NIA
Dec 2018
– Feb 2019
Data Science in Health Informatics Workshop Winter 2019
Role: Principal Investigator
Funding: *NORTHEASTERN UNIVERSITY OF CHINA
Sep 2018
– Jun 2023
Using PCORnet to Compare Blood Pressure Control Strategies
Role: Other
Funding: UNIV OF CALIFORNIA SAN FRANCISCO
via PATIENT-CENTERED OUTCOMES RES INST
Jul 2018
ACTIVE
Implementing a Guidelines-Based M-Health Intervention for High Risk Asthma Patients
Role: Project Manager
Funding: ARKANSAS CHILDRENS RESEARCH INSTITUTE
via NATL INST OF HLTH NINR
Jun 2018
– Dec 2018
2018 Data Science in Health Informatics Summer Workshop
Role: Principal Investigator
Funding: *NORTHEASTERN UNIVERSITY OF CHINA
Dec 2017
– Aug 2018
The Mid-South CDRN
Role: Co-Investigator
Funding: VANDERBILT UNIVERSITY MEDICAL CENTER
via PATIENT-CENTERED OUTCOMES RES INST
Sep 2017
– Aug 2022
A Person-Centric Prediction Model of Job Loss based on Social Media Data and Linguistic and Linguistic Analytics
Role: Co-Project Director/Principal Investigator
Funding: NATL SCIENCE FOU
Nov 2016
– Oct 2017
Planning for congenital Zika syndrome surveillance in PCORnet and Sentinel
Role: Co-Investigator
Funding: PATIENT-CENTERED OUTCOMES RES INST
Oct 2016
– Mar 2020
FL's Next Gen of Prescription Drug Related Surveillance: Data into Insights that Enhance PDMP Best Practices
Role: Co-Investigator
Funding: US DEPT OF JUSTICE
Sep 2016
– Jun 2021
Improving Patient Reported Outcome Data for Research through Seamless Integration of the PROMIS Toolkit into EHR Workflows
Role: Principal Investigator
Funding: NORTHWESTERN UNIV
via NATL INST OF HLTH NCATS
Aug 2016
– Dec 2021
Methods and Software for Lifecourse Epidemiology Data and Sample Size Analysis
Role: Co-Investigator
Funding: UNIV OF COLORADO DENVER & ANSCHUTZ MED
via NATL INST OF HLTH NIGMS
Feb 2015
– Oct 2023
UF Health Cancer Center Pilot Project Grants funded through the Florida Consortium of National Cancer Institute Centers Program
Role: Project Manager
Funding: UF HEALTH SHANDS HOSPITAL
Education
Ph.D. – Integrated Computing
2010
·
University of Arkansas at Little Rock
M.S. – Computer Science
2008
·
University of Arkansas at Little Rock
B.S. – Architectural Environment & Equipment Engineering
2005
·
Tongji University
Contact Details
Phones:
- Business:
- (352) 273-8878
Emails:
- Business:
- bianjiang@ufl.edu
Addresses:
- Business Mailing:
-
PO Box 100177
2197 MOWRY RD STE 122
GAINESVILLE FL 32610